A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics (Q34728031)

4 August 2017

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics (English)

1 reference

4 August 2017

Jan Erik Schliep

3

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Shabaz Mohammed

object named as

Shabaz Mohammed

5

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Bernhard Kuster

object named as

Bernhard Kuster

9

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Jürgen Cox

6

object named as

Jürgen Cox

1 reference

4 August 2017

7

Matthias Mann

1 reference

4 August 2017

Harald Marx

1

1 reference

4 August 2017

Simone Lemeer

2

1 reference

4 August 2017

Lucrece Matheron

4

1 reference

4 August 2017

Albert J R Heck

8

1 reference

4 August 2017

19 May 2013

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4 August 2017

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4 August 2017

31

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4 August 2017

6

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4 August 2017

557-564

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https://scigraph.springernature.com/pub.10.1038/nbt.2585

4 August 2017

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cites work

Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.

1 reference

Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra

21 January 2018

1 reference

Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation

21 January 2018

1 reference

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

21 January 2018

1 reference

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

Analysis and validation of proteomic data generated by tandem mass spectrometry

21 January 2018

1 reference

Proteomics: a pragmatic perspective

21 January 2018

1 reference

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

21 January 2018

1 reference

Combinatorial libraries of synthetic peptides as a model for shotgun proteomics

21 January 2018

1 reference

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

21 January 2018

1 reference

SLoMo: automated site localization of modifications from ETD/ECD mass spectra.

21 January 2018

1 reference

Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score

21 January 2018

1 reference

Confident phosphorylation site localization using the Mascot Delta Score

21 January 2018

1 reference

Universal and confident phosphorylation site localization using phosphoRS.

21 January 2018

1 reference

Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle

21 January 2018

1 reference

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

21 January 2018

1 reference

Large-scale proteomics analysis of the human kinome

21 January 2018

1 reference

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

21 January 2018

1 reference

Phosphorylation analysis by mass spectrometry: myths, facts, and the consequences for qualitative and quantitative measurements

21 January 2018

1 reference

Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-A pore size C18 sorbents

21 January 2018

1 reference

Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics.

21 January 2018

1 reference

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

21 January 2018

1 reference

Decision tree-driven tandem mass spectrometry for shotgun proteomics

21 January 2018

1 reference

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

21 January 2018

1 reference

Phosphopeptide fragmentation and analysis by mass spectrometry

21 January 2018

1 reference

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

21 January 2018

1 reference

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 January 2018

1 reference

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

21 January 2018

1 reference

A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns

21 January 2018

1 reference

The phosphoproteomics data explosion.

21 January 2018

1 reference

Modification site localization scoring integrated into a search engine.

21 January 2018

1 reference

Modification site localization scoring: strategies and performance

21 January 2018

1 reference

Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment

21 January 2018

1 reference

Peptide retention standards and hydrophobicity indexes in reversed-phase high-performance liquid chromatography of peptides

21 January 2018

1 reference

Chromatographic retention time prediction for posttranslationally modified peptides.

21 January 2018

1 reference

Training, selection, and robust calibration of retention time models for targeted proteomics

21 January 2018

1 reference

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

1 reference

Mobility labeling for parallel CID of ion mixtures.

21 January 2018

1 reference

Analytical strategies for phosphoproteomics

21 January 2018

1 reference

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography

21 January 2018

1 reference

Utility of Accurate Mass Tags for Proteome-Wide Protein Identification

21 January 2018

1 reference

Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23685481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23685481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.2585

1 reference

Dimensions Publication ID

4 August 2017

0 references

1 reference