RNA secondary structure prediction using high-throughput SHAPE (Q34763373)

4 August 2017

title

RNA secondary structure prediction using high-throughput SHAPE (English)

1 reference

4 August 2017

3

Katarzyna J Purzycka

1 reference

4 August 2017

Joanna Sztuba-Solińska

series ordinal

2

object named as

Joanna Sztuba-Solinska

1 reference

4 August 2017

Sabrina Lusvarghi

1

1 reference

4 August 2017

Jason W Rausch

series ordinal

4

1 reference

4 August 2017

Stuart F J Le Grice

series ordinal

5

1 reference

4 August 2017

publication date

31 May 2013

1 reference

Journal of Visualized Experiments

4 August 2017

published in

1 reference

4 August 2017

issue

75

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4 August 2017

page(s)

e50243

1 reference

Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

4 August 2017

cites work

1 reference

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Simplified RNA secondary structure mapping by automation of SHAPE data analysis

7 July 2018

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Modeling and automation of sequencing-based characterization of RNA structure

7 July 2018

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

7 July 2018

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High throughput structural analysis of yeast ribosomes using hSHAPE

7 July 2018

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The roles of RNA in the synthesis of protein

7 July 2018

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7 July 2018

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Toward global RNA structure analysis

7 July 2018

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The RNA transport element of the murine musD retrotransposon requires long-range intramolecular interactions for function

7 July 2018

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High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly

7 July 2018

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Genome-wide measurement of RNA secondary structure in yeast

7 July 2018

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SHAPE-directed RNA secondary structure prediction

7 July 2018

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RNAstructure: software for RNA secondary structure prediction and analysis

7 July 2018

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Structure and function of regulatory RNA elements: ribozymes that regulate gene expression

7 July 2018

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Architecture and secondary structure of an entire HIV-1 RNA genome

7 July 2018

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VARNA: Interactive drawing and editing of the RNA secondary structure

7 July 2018

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Accurate SHAPE-directed RNA structure determination

7 July 2018

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ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

7 July 2018

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High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

7 July 2018

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

7 July 2018

1 reference

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Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727345

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

7 July 2018

1 reference

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PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures

7 July 2018

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

7 July 2018

1 reference

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SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

7 July 2018

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A software system for data analysis in automated DNA sequencing

7 July 2018

1 reference

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The use of a combination of computer-assisted structure prediction and SHAPE probing to elucidate the secondary structures of five viroids.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727345

A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23748604

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3791/50243

1 reference

4 August 2017

1 reference

4 August 2017

1 reference