eQTL Epistasis - Challenges and Computational Approaches (Q34765476)

4 August 2017

title

eQTL Epistasis - Challenges and Computational Approaches (English)

1 reference

4 August 2017

Teresa M Przytycka

3

0 references

Stefan Wuchty

series ordinal

2

object named as

Stefan Wuchty

1 reference

4 August 2017

Yang Huang

1

1 reference

4 August 2017

publication date

31 May 2013

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4 August 2017

published in

Frontiers in Genetics

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4 August 2017

volume

4

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4 August 2017

page(s)

51

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Integration of disease-specific single nucleotide polymorphisms, expression quantitative trait loci and coexpression networks reveal novel candidate genes for type 2 diabetes

4 August 2017

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A systematic eQTL study of cis-trans epistasis in 210 HapMap individuals

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Replication and explorations of high-order epistasis using a large advanced intercross line pedigree

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7 July 2018

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Travelling the world of gene-gene interactions

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A fast algorithm for learning epistatic genomic relationships.

7 July 2018

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A model selection approach for expression quantitative trait loci (eQTL) mapping

7 July 2018

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7 July 2018

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Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components

7 July 2018

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7 July 2018

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Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis

7 July 2018

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7 July 2018

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Mapping complex disease traits with global gene expression

7 July 2018

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Modularity and interactions in the genetics of gene expression

7 July 2018

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A random forest approach to the detection of epistatic interactions in case-control studies

7 July 2018

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7 July 2018

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Genetical genomics: spotlight on QTL hotspots

7 July 2018

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Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems

7 July 2018

1 reference

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Regulatory hotspots in the malaria parasite genome dictate transcriptional variation

7 July 2018

1 reference

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Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases

7 July 2018

1 reference

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eQED: an efficient method for interpreting eQTL associations using protein networks

7 July 2018

1 reference

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Defining genetic interaction

7 July 2018

1 reference

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A forest-based approach to identifying gene and gene gene interactions.

7 July 2018

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7 July 2018

The road to modularity.

1 reference

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Population genomics of human gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Evaporative cooling feature selection for genotypic data involving interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Exploring genetic interactions and networks with yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Power to detect higher-order epistatic interactions in a metabolic pathway using a new mapping strategy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Two-stage two-locus models in genome-wide association

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair

7 July 2018

1 reference

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Genetic interactions between polymorphisms that affect gene expression in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Multiple locus linkage analysis of genomewide expression in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668133

Systematic interpretation of genetic interactions using protein networks

7 July 2018

1 reference

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Transcription control reprogramming in genetic backup circuits

7 July 2018

1 reference

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Network biology: understanding the cell's functional organization

7 July 2018

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

7 July 2018

1 reference

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Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans

7 July 2018

1 reference

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Genetic dissection of transcriptional regulation in budding yeast

7 July 2018

1 reference

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Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer

7 July 2018

1 reference

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Marker pair selection for mapping quantitative trait loci.

7 July 2018

1 reference

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Cluster analysis and display of genome-wide expression patterns

7 July 2018

1 reference

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Effect modification and the limits of biological inference from epidemiologic data.

7 July 2018

1 reference

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Simulation of quantitative characters from qualitatively acting genes : I. Nonallelic gene interactions involving two or three loci.

7 July 2018

1 reference

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Functional overlap and regulatory links shape genetic interactions between signaling pathways.

26 October 2018

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COE: a general approach for efficient genome-wide two-locus epistasis test in disease association study.

26 October 2018

1 reference

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Predictive rule inference for epistatic interaction detection in genome-wide association studies.

26 October 2018

1 reference

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Controlling false positives in the mapping of epistatic QTL.

26 October 2018

1 reference

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Multiple interval mapping for gene expression QTL analysis

26 October 2018

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Interactions in epidemiology: relevance, identification, and estimation.

26 October 2018

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FastChi: an efficient algorithm for analyzing gene-gene interactions

26 October 2018

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SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies.

26 October 2018

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Genotype matrix mapping: searching for quantitative trait loci interactions in genetic variation in complex traits

26 October 2018

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Bayesian inference of epistatic interactions in case-control studies.

26 October 2018

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Mapping the genetic architecture of complex traits in experimental populations.

26 October 2018

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Genome-wide strategies for detecting multiple loci that influence complex diseases.

26 October 2018

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Rapid coevolution of the nematode sex-determining genes fem-3 and tra-2.

26 October 2018

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INTERSNP: genome-wide interaction analysis guided by a priori information

26 October 2018

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9 December 2018

Identifiers

DOI

10.3389/FGENE.2013.00051

1 reference

4 August 2017

1 reference

4 August 2017

1 reference