SHAPE-Seq: High-Throughput RNA Structure Analysis (Q34780043)

4 August 2017

SHAPE-Seq: High-Throughput RNA Structure Analysis (English)

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4 August 2017

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4

Lior Pachter

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Cole Trapnell

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2

object named as

Cole Trapnell

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4 August 2017

Stefanie A Mortimer

1

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PubMed ID

23788555

4 August 2017

Sharon Aviran

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3

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PubMed ID

23788555

4 August 2017

Julius B Lucks

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5

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4 August 2017

1 December 2012

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Current protocols in chemical biology

4 August 2017

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4 August 2017

4

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4 August 2017

4

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4 August 2017

275-297

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The Eukaryotic Genome as an RNA Machine

4 August 2017

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Modeling and automation of sequencing-based characterization of RNA structure

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Accurate SHAPE-directed RNA structure determination

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group I intron RNA.

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Computational methods for transcriptome annotation and quantification using RNA-seq

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

21 January 2018

RNA synthetic biology

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Genome-wide measurement of RNA secondary structure in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Understanding the errors of SHAPE-directed RNA structure modeling

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Ultraviolet shadowing of RNA can cause significant chemical damage in seconds

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Crystal structure of the specificity domain of ribonuclease P

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

SHAPE-directed RNA secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Sequencing technologies - the next generation

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Time-resolved RNA SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Next-generation DNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Advances in RNA structure analysis by chemical probing

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

RNA structure probing dash seq.

21 January 2018

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https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Exploring RNA structural codes with SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9780470559277.CH120019

10.1002/9780470559277.CH120019

21 January 2018

Identifiers

DOI

1 reference

4 August 2017

1 reference

PubMed ID

23788555