Improving a designed photocontrolled DNA-binding protein (Q34782043)

4 August 2017

Improving a designed photocontrolled DNA-binding protein (English)

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4 August 2017

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Helen Y Fan

1

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4 August 2017

Stacy-Anne Morgan

2

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4 August 2017

Katherine E Brechun

3

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4 August 2017

Yih-Yang Chen

4

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4 August 2017

Anna S I Jaikaran

5

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4 August 2017

G Andrew Woolley

6

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4 August 2017

language of work or name

English

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publication date

27 January 2011

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4 August 2017

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4 August 2017

50

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4 August 2017

1226-1237

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4 August 2017

7

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describes a project that uses

4 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3074601/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Rationally improving LOV domain-based photoswitches

1 reference

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Emerging roles of ATF2 and the dynamic AP1 network in cancer

7 July 2018

1 reference

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Light activation as a method of regulating and studying gene expression

7 July 2018

1 reference

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Induction of protein-protein interactions in live cells using light

7 July 2018

1 reference

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Functional tuning of photoactive yellow protein by active site residue 46.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Proline 54 trans-cis isomerization is responsible for the kinetic partitioning at the last-step photocycle of photoactive yellow protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Light-activated DNA binding in a designed allosteric protein

7 July 2018

1 reference

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Macromolecular modeling with rosetta

7 July 2018

1 reference

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A partial loss of function allele of methyl-CpG-binding protein 2 predicts a human neurodevelopmental syndrome

7 July 2018

1 reference

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Diverse roles of glycine residues conserved in photoactive yellow proteins.

7 July 2018

1 reference

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Modeling backbone flexibility improves protein stability estimation.

7 July 2018

1 reference

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AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles

7 July 2018

1 reference

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Role of a conserved salt bridge between the PAS core and the N-terminal domain in the activation of the photoreceptor photoactive yellow protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Reversible photocontrol of DNA binding by a designed GCN4-bZIP protein

7 July 2018

1 reference

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From JNK to pay dirt: jun kinases, their biochemistry, physiology and clinical importance

7 July 2018

1 reference

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How frequent is altered gene expression among susceptibility genes to human complex disorders?

7 July 2018

1 reference

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Coiled coil domains: stability, specificity, and biological implications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Photoreception in Neurospora : a tale of two White Collar proteins

7 July 2018

1 reference

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A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Functions of AP1 (Fos/Jun) in bone development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

A light-switchable gene promoter system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Preparation and properties of a 3,4-dihydroxycinnamic acid chromophore variant of the photoactive yellow protein.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Buried polar residues and structural specificity in the GCN4 leucine zipper

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Engineered disulfide bonds as probes of the folding pathway of barnase: increasing the stability of proteins against the rate of denaturation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Computational evaluation of protein stability change upon mutations.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Structure-based design of a photocontrolled DNA binding protein.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Upregulation of neurodevelopmental genes during scarless healing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Eris: an automated estimator of protein stability.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Early molecular events in the photoactive yellow protein: role of the chromophore photophysics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3074601

26 October 2018

Identifiers

DOI

10.1021/BI101432P

1 reference

release_x46rygmc2rb4zirjftuj2k2pwa

4 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x46rygmc2rb4zirjftuj2k2pwa

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3074601

1 reference

4 August 2017

1 reference