Remote thioredoxin recognition using evolutionary conservation and structural dynamics (Q34786682)

4 August 2017

title

Remote thioredoxin recognition using evolutionary conservation and structural dynamics (English)

1 reference

4 August 2017

2

Russ B Altman

1 reference

4 August 2017

Grace W Tang

1

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4 August 2017

language of work or name

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1 April 2011

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4 August 2017

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4 August 2017

volume

19

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4 August 2017

issue

4

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4 August 2017

page(s)

461-470

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Dynameomics: a comprehensive database of protein dynamics

4 August 2017

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8 July 2018

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An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations

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8 July 2018

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8 July 2018

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8 July 2018

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Thioredoxin-1 is a novel and attractive therapeutic approach for various diseases including cardiovascular disorders

8 July 2018

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8 July 2018

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Thioredoxin system inhibitors as mediators of apoptosis for cancer therapy.

8 July 2018

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8 July 2018

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8 July 2018

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The disulfide bond formation (Dsb) system

8 July 2018

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Protein crystallization: from purified protein to diffraction-quality crystal

8 July 2018

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The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation

8 July 2018

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Dynamic personalities of proteins

8 July 2018

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Accelerating molecular modeling applications with graphics processors

8 July 2018

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The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

8 July 2018

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8 July 2018

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8 July 2018

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Exploring protein native states and large-scale conformational changes with a modified generalized born model

8 July 2018

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8 July 2018

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Announcing the worldwide Protein Data Bank

8 July 2018

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8 July 2018

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Can sequence determine function?

8 July 2018

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Modeling of loops in protein structures

8 July 2018

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Physiological functions of thioredoxin and thioredoxin reductase

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

8 July 2018

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Crystal structures of reduced and oxidized DsbA: investigation of domain motion and thiolate stabilization

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Crystal structures of reduced, oxidized, and mutated human thioredoxins: evidence for a regulatory homodimer

8 July 2018

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VMD: visual molecular dynamics

8 July 2018

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Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2.

8 July 2018

1 reference

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High-resolution solution structures of oxidized and reduced Escherichia coli thioredoxin

8 July 2018

1 reference

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Thioredoxin--a fold for all reasons

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

SCOP: a structural classification of proteins database for the investigation of sequences and structures

8 July 2018

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Conformational and functional similarities between glutaredoxin and thioredoxins.

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

8 July 2018

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The relation between the divergence of sequence and structure in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Thioredoxin and glutaredoxin: small multi-functional redox proteins with active-site disulphide bonds

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Variability of conformations at crystal contacts in BPTI represent true low-energy structures: correspondence among lattice packing and molecular dynamics structures

8 July 2018

1 reference

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Side-chain torsional potentials: effect of dipeptide, protein, and solvent environment

8 July 2018

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Three-dimensional structure of thioredoxin induced by bacteriophage T4

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Glutathione-dependent enzyme reactions of the phage T4 ribonucleotide reductase system

8 July 2018

1 reference

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Identifying Protein Domains with the Pfam Database

8 July 2018

1 reference

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Geometry-based sampling of conformational transitions in proteins.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Crystal structure of an unusual thioredoxin protein with a zinc finger domain.

26 October 2018

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A conserved cis-proline precludes metal binding by the active site thiolates in members of the thioredoxin family of proteins.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study.

26 October 2018

1 reference

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Automated discovery of 3D motifs for protein function annotation

26 October 2018

1 reference

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Structure of the reduced disulfide-bond isomerase DsbC from Escherichia coli

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Efficient identification of side-chain patterns using a multidimensional index tree

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Identification and characterization of thioredoxin and thioredoxin reductase from Aeropyrum pernix K1.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3075543

Structural genomics takes off.

26 October 2018

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Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

26 October 2018

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Structural and functional relations among thioredoxins of different species

26 October 2018

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Protein disulphide-isomerase: a homologue of thioredoxin implicated in the biosynthesis of secretory proteins

26 October 2018

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12 December 2020

The evolution of protein structures

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12 December 2020

The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology

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12 December 2020

Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking

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12 December 2020

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12 December 2020

On the Role of the Crystal Environment in Determining Protein Side-chain Conformations

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10.1016/J.STR.2011.02.007

Identifiers

DOI

1 reference

4 August 2017

1 reference

4 August 2017

1 reference