Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein (Q34788483)

4 August 2017

Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein (English)

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4 August 2017

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6

Valerie Daggett

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4 August 2017

Heinrich Roder

7

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William DeGrado

8

object named as

William F DeGrado

1 reference

4 August 2017

5

Steven J Lahr

1 reference

4 August 2017

Yongjin Zhu

1

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4 August 2017

Darwin O V Alonso

2

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4 August 2017

Kosuke Maki

3

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4 August 2017

Cheng-Yen Huang

4

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4 August 2017

Feng Gai

9

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4 August 2017

language of work or name

English

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publication date

11 December 2003

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Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

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4 August 2017

100

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4 August 2017

26

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4 August 2017

15486-15491

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Unifying features in protein-folding mechanisms

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

The protein-folding speed limit: intrachain diffusion times set by electron-transfer rates in denatured Ru(NH3)5(His-33)-Zn-cytochrome c.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

The complete folding pathway of a protein from nanoseconds to microseconds

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Is there a unifying mechanism for protein folding?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Absolute comparison of simulated and experimental protein-folding dynamics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Helix formation via conformation diffusion search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Using flexible loop mimetics to extend -value analysis to secondary structure interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Measuring the rate of intramolecular contact formation in polypeptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

The speed limit for protein folding measured by triplet-triplet energy transfer.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Cytochrome b562 folding triggered by electron transfer: approaching the speed limit for formation of a four-helix-bundle protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Solution structure and dynamics of a de novo designed three-helix bundle protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

From coiled coils to small globular proteins: design of a native-like three-helix bundle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Contact order, transition state placement and the refolding rates of single domain proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

The folding kinetics and thermodynamics of the Fyn-SH3 domain.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Protein folding in the landscape perspective: chevron plots and non-Arrhenius kinetics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Folding dynamics and mechanism of beta-hairpin formation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Thermodynamic properties of an extremely rapid protein folding reaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Barriers to protein folding: formation of buried polar interactions is a slow step in acquisition of structure.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Fast events in protein folding: helix melting and formation in a small peptide.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Determination of protein secondary structure by Fourier transform infrared spectroscopy: a critical assessment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Funnels, pathways, and the energy landscape of protein folding: a synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Submillisecond folding of monomeric lambda repressor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Negative activation enthalpies in the kinetics of protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Folding of immunogenic peptide fragments of proteins in water solution. II. The nascent helix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

How does protein folding get started?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Molecular dynamics simulations of small peptides: dependence on dielectric model and pH.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307594

Preorganized secondary structure as an important determinant of fast protein folding

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Hydrophobic core malleability of a de novo designed three-helix bundle protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Global analysis of the effects of temperature and denaturant on the folding and unfolding kinetics of the N-terminal domain of the protein L9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Long-range interactions within a nonnative protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

NMR and temperature-jump measurements of de novo designed proteins demonstrate rapid folding in the absence of explicit selection for kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Folding at the speed limit

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Evidence for barrier-limited protein folding kinetics on the microsecond time scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Submillisecond folding of the peripheral subunit-binding domain 1 1Edited by P. E. Wright

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Dynamic NMR Line-Shape Analysis Demonstrates that the Villin Headpiece Subdomain Folds on the Microsecond Time Scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

Extremely fast folding of a very stable leucine zipper with a strengthened hydrophobic core and lacking electrostatic interactions between helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136623100

21 January 2018

Identifiers

DOI

10.1073/PNAS.2136623100

1 reference

release_dx7xqhhrynabdfao3mv2brmq2a

4 August 2017

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1 reference

Fatcat

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24 November 2022

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PMCID

307594

1 reference

4 August 2017

1 reference