Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge (Q34844839)

4 August 2017

title

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge (English)

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Martin Krallinger

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Lynette Hirschman

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Alexander Morgan

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Larry Smith

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3

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Lorraine Tanabe

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John Wilbur

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publication date

1 September 2008

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4 August 2017

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volume

9 Suppl 2

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page(s)

S1

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Linking genes to literature: text mining, information extraction, and retrieval applications for biology

4 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Overview of BioCreative II gene normalization

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Overview of BioCreative II gene mention recognition

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Assessment of predictions submitted for the CASP7 function prediction category.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Evaluation and comparison of mammalian subcellular localization prediction methods

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

What is a support vector machine?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

EGASP: the human ENCODE Genome Annotation Assessment Project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

BioCreAtIvE task 1A: gene mention finding evaluation

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Evaluation of BioCreAtIvE assessment of task 2

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Overview of BioCreAtIvE task 1B: normalized gene lists

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Overview of BioCreAtIvE: critical assessment of information extraction for biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

A comparison of signal sequence prediction methods using a test set of signal peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

Protein alchemy: changing beta-sheet into alpha-helix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559980

8 July 2018

Identifiers

DOI

10.1186/GB-2008-9-S2-S1

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Dimensions Publication ID

4 August 2017

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4 August 2017

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