The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases (Q34862908)

5 August 2017

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases (English)

1 reference

5 August 2017

1 reference

3

Simon Jupp

0 references

Julie Klein

Julie Klein

2

0 references

Jean-Loup Bascands

Jean-Loup Bascands

5

0 references

Joost P Schanstra

Joost P Schanstra

6

0 references

Robert David Stevens

4

Robert Stevens

1 reference

5 August 2017

Panagiotis Moulos

1

1 reference

5 August 2017

24 July 2013

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5 August 2017

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5 August 2017

14

1 reference

5 August 2017

235

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Creative Commons Attribution 2.0 Generic

5 August 2017

start time

24 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

Cytoscape

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-235

0 references

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Interleukin-6, its role in fibrosing conditions

8 July 2018

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8 July 2018

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The KUPKB: a novel Web application to access multiomics data on kidney disease

8 July 2018

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

8 July 2018

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8 July 2018

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KEGG for integration and interpretation of large-scale molecular data sets

8 July 2018

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Interleukin 6 underlies angiotensin II-induced hypertension and chronic renal damage

8 July 2018

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8 July 2018

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8 July 2018

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Developing a kidney and urinary pathway knowledge base

8 July 2018

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Exploiting Statistical Methodologies and Controlled Vocabularies for Prioritized Functional Analysis of Genomic Experiments: the StRAnGER Web Application

8 July 2018

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8 July 2018

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The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

8 July 2018

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miRBase: integrating microRNA annotation and deep-sequencing data

8 July 2018

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Inflammation, oxidative stress, and insulin resistance in polycystic kidney disease

8 July 2018

1 reference

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Cyst formation in the PKD2 (1-703) transgenic rat precedes deregulation of proliferation-related pathways

8 July 2018

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Cytoscape Web: an interactive web-based network browser

8 July 2018

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The biomarker enriched proteome of autosomal dominant polycystic kidney disease cyst fluid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Cross-platform analysis of global microRNA expression technologies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients

8 July 2018

1 reference

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Visualization of omics data for systems biology

8 July 2018

1 reference

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Sequencing technologies - the next generation

8 July 2018

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EGAN: exploratory gene association networks

8 July 2018

1 reference

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VANLO--interactive visual exploration of aligned biological networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

8 July 2018

1 reference

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Biological knowledge management: the emerging role of the Semantic Web technologies

8 July 2018

1 reference

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Systems biology of autosomal dominant polycystic kidney disease (ADPKD): computational identification of gene expression pathways and integrated regulatory networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Gene expression in early and progression phases of autosomal dominant polycystic kidney disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

A survey of visualization tools for biological network analysis

8 July 2018

1 reference

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

8 July 2018

1 reference

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Learning biological networks: from modules to dynamics

8 July 2018

1 reference

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Altered expression of calreticulin during the development of fibrosis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Construction, visualisation, and clustering of transcription networks from microarray expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Transcriptional profiling of native inner medullary collecting duct cells from rat kidney

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Tools for visually exploring biological networks.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Getting connected: analysis and principles of biological networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Mass spectrometry-based metabolomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Multiplexed protein measurement: technologies and applications of protein and antibody arrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

VANTED: a system for advanced data analysis and visualization in the context of biological networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

High-throughput identification of IMCD proteins using LC-MS/MS

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

SpectralNET--an application for spectral graph analysis and visualization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Control of yeast filamentous-form growth by modules in an integrated molecular network

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Osprey: a network visualization system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

Unique changes in interstitial extracellular matrix composition are associated with rejection and cyclosporine toxicity in human renal allograft biopsies.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-235

Establishing the molecular pathways involved in chronic allograft nephropathy for testing new noninvasive diagnostic markers

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-235

Compressed Adjacency Matrices: Untangling Gene Regulatory Networks.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725151

In-depth proteomic profiling of the normal human kidney glomerulus using two-dimensional protein prefractionation in combination with liquid chromatography-tandem mass spectrometry

26 October 2018

1 reference

12 December 2020

Attenuated liver fibrosis and depressed serum albumin levels in carbon tetrachloride-treated IL-6-deficient mice

1 reference

12 December 2020

Immunization with DNA topoisomerase I and Freund's complete adjuvant induces skin and lung fibrosis and autoimmunity via interleukin-6 signaling

1 reference

12 December 2020

Endothelin-mediated oncofetal fibronectin expression in chronic allograft nephropathy

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-14-235

1 reference

journals/bmcbi/MoulosKJSBS13

5 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

5 August 2017

1 reference

PubMed ID

23883183