Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal (Q34866432)

5 August 2017

title

Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal (English)

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5 August 2017

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6

Philip Hugenholtz

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Katherine D. McMahon

object named as

Katherine D McMahon

7

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Susannah G. Tringe

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Susannah G Tringe

5

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Stephanie A. Malfatti

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object named as

Stephanie Malfatti

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5 August 2017

2

Shaomei He

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5 August 2017

Jason J Flowers

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5 August 2017

Tijana Glavina del Rio

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5 August 2017

publication date

25 July 2013

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5 August 2017

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5 August 2017

volume

7

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5 August 2017

issue

12

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5 August 2017

page(s)

2301-2314

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Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system.

5 August 2017

cites work

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8 July 2018

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Genome sequences of Alicycliphilus denitrificans strains BC and K601T

8 July 2018

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8 July 2018

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8 July 2018

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Denitrification capabilities of two biological phosphorus removal sludges dominated by different Candidatus Accumulibacter clades

8 July 2018

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'Candidatus Accumulibacter' gene expression in response to dynamic EBPR conditions

8 July 2018

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Incorporating microbial ecology into the metabolic modelling of polyphosphate accumulating organisms and glycogen accumulating organisms.

8 July 2018

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Bacterial community and "Candidatus Accumulibacter" population dynamics in laboratory-scale enhanced biological phosphorus removal reactors

8 July 2018

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

8 July 2018

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Assessing the abundance and activity of denitrifying polyphosphate accumulating organisms through molecular and chemical techniques

8 July 2018

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Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

8 July 2018

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Biogeography of the Sulfolobus islandicus pan-genome

8 July 2018

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Isolation and characterization of Alicycliphilus denitrificans strain BC, which grows on benzene with chlorate as the electron acceptor

8 July 2018

1 reference

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Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Discovery of a ferredoxin:NAD+-oxidoreductase (Rnf) in Acetobacterium woodii: a novel potential coupling site in acetogens

8 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

8 July 2018

1 reference

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The RAST Server: rapid annotations using subsystems technology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

8 July 2018

1 reference

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A bacterial metapopulation adapts locally to phage predation despite global dispersal

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

"Candidatus Accumulibacter" population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Progress toward understanding the distribution of Accumulibacter among full-scale enhanced biological phosphorus removal systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

PAML 4: phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Advances in enhanced biological phosphorus removal: from micro to macro scale

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

8 July 2018

1 reference

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8 July 2018

1 reference

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Bacterial nitrate reductases: Molecular and biological aspects of nitrate reduction.

8 July 2018

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8 July 2018

1 reference

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Application of tetranucleotide frequencies for the assignment of genomic fragments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

1 reference

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Informatics for unveiling hidden genome signatures

8 July 2018

1 reference

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Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing beta-proteobacterium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

EMBOSS: the European Molecular Biology Open Software Suite

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834850

Anaerobic glyoxylate cycle activity during simultaneous utilization of glycogen and acetate in uncultured Accumulibacter enriched in enhanced biological phosphorus removal communities

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.117

DNA sequence quality trimming and vector removal

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.117

Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.117

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.117

Denitrifying phosphorus removal: linking the process performance with the microbial community structure

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23887171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Metabolic shift of polyphosphate-accumulating organisms with different levels of polyphosphate storage

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23887171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2013.117

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Dimensions Publication ID

5 August 2017

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5 August 2017

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