Integrating regulatory motif discovery and genome-wide expression analysis (Q34869275)

5 August 2017

Integrating regulatory motif discovery and genome-wide expression analysis (English)

1 reference

5 August 2017

3

Jason D Lieb

1 reference

5 August 2017

Erin M Conlon

1

1 reference

5 August 2017

X Shirley Liu

series ordinal

2

1 reference

5 August 2017

Jun S Liu

series ordinal

4

1 reference

5 August 2017

language of work or name

English

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publication date

7 March 2003

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Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

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5 August 2017

100

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5 August 2017

6

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5 August 2017

3339-3344

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Transcriptional regulatory networks in Saccharomyces cerevisiae

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Distribution patterns of over-represented k-mers in non-coding yeast DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Serial regulation of transcriptional regulators in the yeast cell cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Regulatory element detection using correlation with expression.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Genomic expression programs in the response of yeast cells to environmental changes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Mining for putative regulatory elements in the yeast genome using gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

A statistical method for finding transcription factor binding sites.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Finding regulatory elements using joint likelihoods for sequence and expression profile data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

The economics of ribosome biosynthesis in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Systematic determination of genetic network architecture

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Cluster analysis and display of genome-wide expression patterns

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Analysis of a meiosis-specific URS1 site: sequence requirements and involvement of replication protein A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Ste12 and Mcm1 regulate cell cycle-dependent transcription of FAR1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Identifying protein-binding sites from unaligned DNA fragments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Sequence logos: a new way to display consensus sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152294

Identification of regulatory elements using a feature selection method.

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0630591100

Widespread aneuploidy revealed by DNA microarray expression profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0630591100

Genome-wide binding map of the histone deacetylase Rpd3 in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0630591100

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0630591100

21 January 2018

Identifiers

DOI

10.1073/PNAS.0630591100

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference