Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking. (Q34880531)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Susan P. Holmes

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1

Paul J McMurdie

1 reference

PubMed publication ID

5 August 2017

Susan Holmes

2

1 reference

PubMed publication ID

25262154

5 August 2017

language of work or name

English

0 references

publication date

26 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

number of pages

2

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

282-283

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

20 February 2020

copyright license

start time

3 November 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ggplot2

object named as

ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4287943

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/4287943

based on heuristic

inferred from PubMed Central ID database lookup

phyloseq

object named as

phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Waste not, want not: why rarefying microbiome data is inadmissible

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

Reproducible Research in Computational Science

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

D³: Data-Driven Documents

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

Differential expression analysis for sequence count data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

QIIME allows analysis of high-throughput community sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

APE: Analyses of Phylogenetics and Evolution in R language

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287943

10.1093/BIOINFORMATICS/BTU616

8 July 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/McMurdieH15

20 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

25262154

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262154%20AND%20SRC:MED&resulttype=core&format=json