Intrinsic and extrinsic approaches for detecting genes in a bacterial genome (Q34895572)

5 August 2017

title

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome (English)

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5 August 2017

3

E V Koonin

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5 August 2017

M Borodovsky

1

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5 August 2017

K E Rudd

series ordinal

2

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5 August 2017

language of work or name

English

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publication date

1 November 1994

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full work available at URL

5 August 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC308528

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published in

Nucleic Acids Research

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5 August 2017

volume

22

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5 August 2017

issue

22

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5 August 2017

page(s)

4756-4767

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Identification of protein coding regions by database similarity search

5 August 2017

cites work

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Codon preference and its use in identifying protein coding regions in long DNA sequences

8 July 2018

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Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification

8 July 2018

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The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Statistical method for predicting protein coding regions in nucleic acid sequences.

8 July 2018

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8 July 2018

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Codon preference and primary sequence structure in protein-coding regions.

8 July 2018

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Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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The form II fructose 1,6-bisphosphatase and phosphoribulokinase genes form part of a large operon in Rhodobacter sphaeroides: primary structure and insertional mutagenesis analysis

8 July 2018

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Superfamily of UvrA-related NTP-binding proteins. Implications for rational classification of recombination/repair systems

8 July 2018

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8 July 2018

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8 July 2018

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Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock sigma factor (sigma 32).

8 July 2018

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8 July 2018

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Evidence for horizontal gene transfer in Escherichia coli speciation

8 July 2018

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The psaC genes of Synechococcus sp. PCC7002 and Cyanophora paradoxa: cloning and sequence analysis

8 July 2018

1 reference

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Assessment of protein coding measures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Amino acid substitution matrices from protein blocks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

First and second moment of counts of words in random texts generated by Markov chains.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

The prediction of exons through an analysis of spliceable open reading frames

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Ancient conserved regions in new gene sequences and the protein databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Database of ancient sequences

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Large scale bacterial gene discovery by similarity search.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308528

Complexity charts can be used to map functional domains in DNA

26 October 2018

1 reference

12 December 2020

gm: a practical tool for automating DNA sequence analysis

1 reference

12 December 2020

New genes in old sequence: a strategy for finding genes in the bacterial genome

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12 December 2020

Performance evaluation of amino acid substitution matrices

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12 December 2020

Identifiers

DOI

10.1093/NAR/22.22.4756

1 reference

5 August 2017

1 reference

5 August 2017

1 reference