Investigating the impact of storage conditions on microbial community composition in soil samples (Q34922908)

5 August 2017

Investigating the impact of storage conditions on microbial community composition in soil samples (English)

1 reference

5 August 2017

Sean M Gibbons

2

0 references

Jack A Gilbert

6

object named as

Jack A Gilbert

1 reference

5 August 2017

Benjamin E R Rubin

1

1 reference

5 August 2017

Suzanne Kennedy

3

1 reference

5 August 2017

Jarrad Hampton-Marcell

4

1 reference

5 August 2017

Sarah Owens

5

1 reference

5 August 2017

language of work or name

English

0 references

publication date

31 July 2013

1 reference

5 August 2017

1 reference

5 August 2017

8

1 reference

5 August 2017

e70460

1 reference

5 August 2017

7

1 reference

Creative Commons Attribution 4.0 International

5 August 2017

start time

31 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The cervical microbiome over 7 years and a comparison of methodologies for its characterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Structure, function and diversity of the healthy human microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Unlocking the potential of metagenomics through replicated experimental design

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Natural product biosynthetic gene diversity in geographically distinct soil microbiomes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Metagenomic sequencing of an in vitro-simulated microbial community

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

QIIME allows analysis of high-throughput community sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Bacterial community variation in human body habitats across space and time

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Influence of fecal sample storage on bacterial community diversity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Metagenomics: application of genomics to uncultured microorganisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Metagenomics: genomic analysis of microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Interactions and self-organization in the soil-microbe complex.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Quantification of bias related to the extraction of DNA directly from soils

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3729949

Storage of environmental samples for guaranteeing nucleic acid yields for molecular microbiological studies.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0070460

In vitro alterations of intestinal bacterial microbiota in fecal samples during storage.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0070460

The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0070460

A strategy for optimizing quality and quantity of DNA extracted from soil

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23936206

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Freezing at -800 degrees C distorts the DNA composition of bacterial communities in intestinal samples

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23936206

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0070460

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference