Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis (Q34964350)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Esteban O. Mazzoni

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Richard A. Young

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

author name string

Scott McCuine

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Hynek Wichterle

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

David K Gifford

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

publication date

13 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

page(s)

R2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

20 January 2020

limma

object named as

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3091300

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2011-12-1-r2

0 references

cites work

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Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

8 July 2018

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Cell-specific interaction of retinoic acid receptors with target genes in mouse embryonic fibroblasts and embryonic stem cells

8 July 2018

1 reference

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Modifications of RNA polymerase II are pivotal in regulating gene expression states

8 July 2018

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Genomic antagonism between retinoic acid and estrogen signaling in breast cancer.

8 July 2018

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The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development.

8 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

8 July 2018

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An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.

8 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

8 July 2018

1 reference

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ChIP-seq accurately predicts tissue-specific activity of enhancers

8 July 2018

1 reference

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Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia

8 July 2018

1 reference

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

8 July 2018

1 reference

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Prediction of regulatory elements in mammalian genomes using chromatin signatures.

8 July 2018

1 reference

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High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites

8 July 2018

1 reference

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Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis

8 July 2018

1 reference

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Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Model-based analysis of ChIP-Seq (MACS)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Genome-scale DNA methylation maps of pluripotent and differentiated cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Database resources of the National Center for Biotechnology Information

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

A short ultraconserved sequence drives transcription from an alternate FBN1 promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Selective repression of retinoic acid target genes by RIP140 during induced tumor cell differentiation of pluripotent human embryonal carcinoma cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

8 July 2018

1 reference

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STAMP: a web tool for exploring DNA-binding motif similarities

8 July 2018

1 reference

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Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Phosphorylation of the C-terminal domain of RNA polymerase II plays central roles in the integrated events of eucaryotic gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Utilization of DR1 as true RARE in regulating the Ssm, a novel retinoic acid-target gene in the mouse testis

8 July 2018

1 reference

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Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells

8 July 2018

1 reference

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Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites

8 July 2018

1 reference

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Myc-binding-site recognition in the human genome is determined by chromatin context

8 July 2018

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Nuclear receptor corepressors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

affylmGUI: a graphical user interface for linear modeling of single channel microarray data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Formation of an active tissue-specific chromatin domain initiated by epigenetic marking at the embryonic stem cell stage.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Opposing FGF and retinoid pathways: a signalling switch that controls differentiation and patterning onset in the extending vertebrate body axis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Applied bioinformatics for the identification of regulatory elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

K-ary clustering with optimal leaf ordering for gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Directed differentiation of embryonic stem cells into motor neurons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

The orientation and spacing of core DNA-binding motifs dictate selective transcriptional responses to three nuclear receptors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Retinoic acid in development: towards an integrated view

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

A robust characterization of retinoic acid response elements based on a comparison of sites in three species

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Transcription factor binding site identification using the self-organizing map.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Prediction of nuclear hormone receptor response elements.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Assigning the positional identity of spinal motor neurons: rostrocaudal patterning of Hox-c expression by FGFs, Gdf11, and retinoids.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Retinoic acid synthesis and hindbrain patterning in the mouse embryo.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

Motor neuron-derived retinoid signaling specifies the subtype identity of spinal motor neurons.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091300

A sonic hedgehog-independent, retinoid-activated pathway of neurogenesis in the ventral spinal cord

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21232103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Requirement for Retinoic Acid-Mediated Transcriptional Activation in Ventral Neural Patterning and Motor Neuron Specification

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21232103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2011-12-1-R2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21232103%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference