Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee (Q34974325)

5 August 2017

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee (English)

1 reference

5 August 2017

1 reference

1 reference

0 references

4

1 reference

5 August 2017

Sébastien Moretti

2

0 references

Cedric Notredame

object named as

Cedric Notredame

8

0 references

author name string

Fabrice Armougom

1

1 reference

5 August 2017

Olivier Poirot

3

1 reference

5 August 2017

Pierre Dumas

5

1 reference

5 August 2017

Basile Schaeli

6

1 reference

5 August 2017

Vladimir Keduas

7

1 reference

5 August 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

5 August 2017

Nucleic Acids Research

1 reference

5 August 2017

34

1 reference

5 August 2017

Web Server issue

1 reference

5 August 2017

W604-8

1 reference

The RCSB PDB information portal for structural genomics

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

MSAT: a multiple sequence alignment tool based on TOPS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

MAFFT version 5: improvement in accuracy of multiple sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Contact-based sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Potential for dramatic improvement in sequence alignment against structures of remote homologous proteins by extracting structural information from multiple structure alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

T-Coffee: A novel method for fast and accurate multiple sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Software for handling macromolecular envelopes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Mapping the protein universe

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Protein structure alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Database of homology-derived protein structures and the structural meaning of sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

3DCoffee: combining protein sequences and structures within multiple sequence alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538866

26 October 2018

Identifiers

DOI

10.1093/NAR/GKL092

1 reference

journals/nar/ArmougomMPADSKN06

5 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference