Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock (Q34981580)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19450533%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock (English)

1 reference

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zinc finger white collar protein WC2

28 January 2020

main subject

circadian rhythm

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FRQ-interacting RNA helicase

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white collar 1 protein, variant 2

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white collar 1 protein, variant 1

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white collar 1 protein

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white collar 1 protein, variant 3

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period clock protein FRQ

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period clock protein FRQ, variant 2

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period clock protein FRQ, variant 1

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1 reference

4

1 reference

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28 January 2020

Arminja N Kettenbach

series ordinal

2

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28 January 2020

3

Jennifer J Loros

1 reference

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28 January 2020

author name string

Christopher L Baker

series ordinal

1

1 reference

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28 January 2020

Jay C Dunlap

series ordinal

5

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28 January 2020

publication date

1 May 2009

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28 January 2020

1 reference

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28 January 2020

volume

34

1 reference

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28 January 2020

issue

3

1 reference

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28 January 2020

page(s)

354-363

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A role for casein kinase 2 in the mechanism underlying circadian temperature compensation

28 January 2020

cites work

1 reference

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Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies

8 July 2018

1 reference

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DOUBLETIME plays a noncatalytic role to mediate CLOCK phosphorylation and repress CLOCK-dependent transcription within the Drosophila circadian clock

8 July 2018

1 reference

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Control of WHITE COLLAR localization by phosphorylation is a critical step in the circadian negative feedback process

8 July 2018

1 reference

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Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus

8 July 2018

1 reference

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Activating PER repressor through a DBT-directed phosphorylation switch

8 July 2018

1 reference

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The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock.

8 July 2018

1 reference

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Prevention of amino acid conversion in SILAC experiments with embryonic stem cells.

8 July 2018

1 reference

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Posttranslational regulation of Neurospora circadian clock by CK1a-dependent phosphorylation

8 July 2018

1 reference

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Protein kinase A and casein kinases mediate sequential phosphorylation events in the circadian negative feedback loop

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms

8 July 2018

1 reference

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Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK

8 July 2018

1 reference

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Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

The Neurospora crassa circadian clock

8 July 2018

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

8 July 2018

1 reference

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Post-translational modifications regulate the ticking of the circadian clock.

8 July 2018

1 reference

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The right place at the right time: regulation of daily timing by phosphorylation

8 July 2018

1 reference

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Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Proteins in the Neurospora circadian clockworks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

The Neurospora checkpoint kinase 2: a regulatory link between the circadian and cell cycles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

8 July 2018

1 reference

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Transcriptional and post-transcriptional regulation of the circadian clock of cyanobacteria and Neurospora

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Phosphorylation-dependent maturation of Neurospora circadian clock protein from a nuclear repressor toward a cytoplasmic activator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Characterization of mouse spleen cells by subtractive proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Regulation of the Neurospora circadian clock by an RNA helicase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

8 July 2018

1 reference

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White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter

8 July 2018

1 reference

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Posttranslational mechanisms regulate the mammalian circadian clock

8 July 2018

1 reference

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A PEST-like element in FREQUENCY determines the length of the circadian period in Neurospora crassa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

8 July 2018

1 reference

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Time zones: a comparative genetics of circadian clocks

8 July 2018

1 reference

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Coiled-coil domain-mediated FRQ-FRQ interaction is essential for its circadian clock function in Neurospora

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Direct analysis of protein complexes using mass spectrometry

8 July 2018

1 reference

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Molecular bases for circadian clocks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Cluster analysis and display of genome-wide expression patterns

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Temporal phosphorylation of the Drosophila period protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Circadian activity and abundance rhythms of the Neurospora clock transcription factor WCC associated with rapid nucleo-cytoplasmic shuttling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2711022

Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH.

26 October 2018

1 reference

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Optimization and use of peptide mass measurement accuracy in shotgun proteomics.

26 October 2018

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Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

26 October 2018

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26 October 2018

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Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

26 October 2018

1 reference

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10.1016/J.MOLCEL.2009.04.023

9 December 2018

Identifiers

DOI

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28 January 2020

1 reference

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28 January 2020

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