Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation (Q34984420)

5 August 2017

title

Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation (English)

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5 August 2017

2

Haeshin Lee

1 reference

5 August 2017

Jason Ming Zhao

1

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5 August 2017

Rene A Nome

3

1 reference

5 August 2017

Sophia Majid

4

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5 August 2017

Norbert F Scherer

5

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5 August 2017

Wouter D Hoff

6

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5 August 2017

language of work or name

English

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publication date

19 July 2006

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Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

published in

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5 August 2017

volume

103

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5 August 2017

issue

31

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5 August 2017

page(s)

11561-11566

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Protein structure by mechanical triangulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

The PAS fold. A redefinition of the PAS domain based upon structural prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Pulling geometry defines the mechanical resistance of a beta-sheet protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Themodynamic and transport properties of intermediate states of the photocyclic reaction of photoactive yellow protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Folding and signaling share the same pathway in a photoreceptor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Grabbing the cat by the tail: manipulating molecules one by one.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

HIF-1 and human disease: one highly involved factor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

The study of protein mechanics with the atomic force microscope

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

PAS domains: internal sensors of oxygen, redox potential, and light

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

The molecular genetics of the long QT syndrome: genes causing fainting and sudden death

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Structure of a protein photocycle intermediate by millisecond time-resolved crystallography

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1544209

Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

Structural basis of a phototropin light switch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

The mechanical stability of ubiquitin is linkage dependent

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

Light induces destabilization of photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

A structural pathway for signaling in the E46Q mutant of photoactive yellow protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

Calibration of atomic‐force microscope tips

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0601567103

Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry

21 January 2018

1 reference

12 December 2020

Steered molecular dynamics simulations of force-induced protein domain unfolding

1 reference

12 December 2020

Role of an N-terminal loop in the secondary structural change of photoactive yellow protein

1 reference

12 December 2020

The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation

1 reference

12 December 2020

Light-induced global conformational change of photoactive yellow protein in solution

1 reference

12 December 2020

NAMD: a Parallel, Object-Oriented Molecular Dynamics Program

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1177/109434209601000401

22 October 2022

Identifiers

DOI

10.1073/PNAS.0601567103

1 reference

5 August 2017

0 references

1 reference

5 August 2017

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