Resistance and resilience of the forest soil microbiome to logging-associated compaction (Q34986207)

5 August 2017

Resistance and resilience of the forest soil microbiome to logging-associated compaction (English)

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5 August 2017

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6

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5 August 2017

Martin Hartmann

1

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Pascal A Niklaus

object named as

Pascal A Niklaus

2

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Stephan Zimmermann

object named as

Stephan Zimmermann

3

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Franco Widmer

8

object named as

Franco Widmer

1 reference

5 August 2017

Stefan Schmutz

4

1 reference

5 August 2017

Johann Kremer

5

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5 August 2017

Peter Lüscher

7

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5 August 2017

Beat Frey

9

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5 August 2017

language of work or name

English

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publication date

12 September 2013

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5 August 2017

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5 August 2017

8

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5 August 2017

1

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5 August 2017

226-244

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describes a project that uses

5 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ismej.2013.141

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cites work

Robust estimation of microbial diversity in theory and in practice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Secondary structure improves OTU assignments of 16S rRNA gene sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Estimating population diversity with CatchAll.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

UCHIME improves sensitivity and speed of chimera detection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Removing noise from pyrosequenced amplicons

8 July 2018

1 reference

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Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Cytoscape 2.8: new features for data integration and network visualization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Saving Forests to Save Biodiversity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Associations between species and groups of sites: indices and statistical inference.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Molecular characterization of bacterial diversity in Lodgepole pine (Pinus contorta) rhizosphere soils from British Columbia forest soils differing in disturbance and geographic source

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Accurate determination of microbial diversity from 454 pyrosequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Colloquium paper: resistance, resilience, and redundancy in microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Resilience of the rhizosphere Pseudomonas and ammonia-oxidizing bacterial populations during phytoextraction of heavy metal polluted soil with poplar

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Distance-based tests for homogeneity of multivariate dispersions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Role of Pore Size Location in Determining Bacterial Activity during Predation by Protozoa in Soil

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Genome sequencing in microfabricated high-density picolitre reactors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

To what extent are the dietary compositions of three abundant, co-occurring labrid species different and related to latitude, habitat, body size and season?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

The UNITE database for molecular identification of fungi--recent updates and future perspectives.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

QVALITY: non-parametric estimation of q-values and posterior error probabilities

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

Compaction of forest soil by logging machinery favours occurrence of prokaryotes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3869018

A note on the power of Fisher's least significant difference procedure

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24030594

12 December 2020

inferred from PubMed ID database lookup

An Ordination of the Upland Forest Communities of Southern Wisconsin

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Non-parametric multivariate analyses of changes in community structure

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Improving indicator species analysis by combining groups of sites

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

A framework for classifying and quantifying the natural capital and ecosystem services of soils

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Some distance properties of latent root and vector methods used in multivariate analysis

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

A study of soil methane sink regulation in two grasslands exposed to drought and N fertilization

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Impacts of forest harvesting on biological processes in northern forest soils

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Diversity and activity of aquatic fungi under low oxygen conditions

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Effects of soil compaction, rain exposure and their interaction on soil carbon dioxide emission

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Field-scale manipulation of soil temperature and precipitation change soil CO2 flux in a temperate agricultural ecosystem

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Global nitrogen deposition and carbon sinks

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Effect of compaction on the porosity of a silty soil: influence on unsaturated hydraulic properties

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Emission of N2O, N2 and CO2 from soil fertilized with nitrate: effect of compaction, soil moisture and rewetting

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

A direct approach to false discovery rates

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Recovery of Severely Compacted Soils in the Mojave Desert, California, USA

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Individual Comparisons by Ranking Methods

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Tillage, habitat space and function of soil microbes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.141

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2013.141

1 reference

Dimensions Publication ID

5 August 2017

0 references

1 reference

5 August 2017

1 reference