Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions (Q34996790)

5 August 2017

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title

Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions (English)

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5 August 2017

Olga Fedorova

1

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5 August 2017

Linhui Julie Su

series ordinal

2

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5 August 2017

Anna Marie Pyle

series ordinal

3

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5 August 2017

publication date

1 November 2002

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5 August 2017

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5 August 2017

volume

28

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5 August 2017

issue

3

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5 August 2017

page(s)

323-335

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Comparative and functional anatomy of group II catalytic introns--a review

5 August 2017

cites work

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7 January 2021

Structure and activities of group II introns

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7 January 2021

The ins and outs of group II introns

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7 January 2021

Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA.

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7 January 2021

Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for MatK as an essential splice factor

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7 January 2021

Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products

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7 January 2021

Group II intron splicing in vivo by first-step hydrolysis

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7 January 2021

The generality of self-splicing RNA: relationship to nuclear mRNA splicing

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7 January 2021

Dynamic RNA-RNA interactions in the spliceosome

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7 January 2021

Multiple magnesium ions in the ribonuclease P reaction mechanism

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7 January 2021

Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing

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7 January 2021

Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions

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7 January 2021

Reverse transcriptase activity associated with maturase-encoding group II introns in yeast mitochondria

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7 January 2021

Efficient integration of an intron RNA into double-stranded DNA by reverse splicing

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7 January 2021

A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: biochemical demonstration of maturase activity and insertion of new genetic information within the intron

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7 January 2021

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

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7 January 2021

A tertiary interaction that links active-site domains to the 5' splice site of a group II intron

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7 January 2021

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure

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7 January 2021

An RNA conformational change between the two chemical steps of group II self-splicing.

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7 January 2021

Multiple tertiary interactions involving domain II of group II self-splicing introns.

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7 January 2021

Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron

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7 January 2021

Group II intron domain 5 facilitates a trans-splicing reaction

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7 January 2021

Kinetic analysis of the 5' splice junction hydrolysis of a group II intron promoted by domain 5.

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7 January 2021

Group II intron self-splicing: development of alternative reaction conditions and identification of a predicted intermediate

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7 January 2021

Reactions catalyzed by group II introns in vitro

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7 January 2021

Splice site selection and role of the lariat in a group II intron

1 reference

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7 January 2021

Group II introns deleted for multiple substructures retain self-splicing activity

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7 January 2021

Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron

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7 January 2021

More than one way to splice an RNA: branching without a bulge and splicing without branching in group II introns.

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7 January 2021

Control of branch-site choice by a group II intron

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7 January 2021

Effect of deletions at structural domains of group II intron bI1 on self-splicing in vitro

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7 January 2021

A maturase-encoding group IIA intron of yeast mitochondria self-splices in vitro

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7 January 2021

A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation

1 reference

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7 January 2021

Thermal activation of a group II intron ribozyme reveals multiple conformational states.

1 reference

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7 January 2021

The two steps of group II intron self-splicing are mechanistically distinguishable.

1 reference

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7 January 2021

Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rate

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7 January 2021

Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena

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7 January 2021

Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups

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7 January 2021

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P

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7 January 2021

Ribozyme catalysis from the major groove of group II intron domain 5.

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7 January 2021

A map of the binding site for catalytic domain 5 in the core of a group II intron ribozyme

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7 January 2021

Kinetic characterization of the second step of group II intron splicing: role of metal ions and the cleavage site 2'-OH in catalysis

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7 January 2021

Catalytically critical nucleotide in domain 5 of a group II intron

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7 January 2021

Catalytic role of 2'-hydroxyl groups within a group II intron active site

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7 January 2021

Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: a technique for RNA structure analysis using chemical probes and reverse transcriptase

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7 January 2021

RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme

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7 January 2021

Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships

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7 January 2021

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

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7 January 2021

Group II intron ribozymes that cleave DNA and RNA linkages with similar efficiency, and lack contacts with substrate 2'-hydroxyl groups

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7 January 2021

Sequence specificity of a group II intron ribozyme: multiple mechanisms for promoting unusually high discrimination against mismatched targets

1 reference

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7 January 2021

Mobility of yeast mitochondrial group II introns: engineering a new site specificity and retrohoming via full reverse splicing

1 reference

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7 January 2021

Group II introns designed to insert into therapeutically relevant DNA target sites in human cells

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7 January 2021

Group II introns as controllable gene targeting vectors for genetic manipulation of bacteria

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Multiple exon-binding sites in class II self-splicing introns

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Guiding ribozyme cleavage through motif recognition: the mechanism of cleavage site selection by a group ii intron ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Efficient trans-splicing of a yeast mitochondrial RNA group II intron implicates a strong 5' exon-intron interaction.

1 reference

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7 January 2021

Visualizing the solvent-inaccessible core of a group II intron ribozyme

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https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

New pathways in folding of the Tetrahymena group I RNA enzyme

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https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Productive folding to the native state by a group II intron ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900239-6

7 January 2021

Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape

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7 January 2021

10.1016/S1046-2023(02)00239-6

Identifiers

DOI

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5 August 2017

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