Type II restriction endonucleases (Q34996805)

5 August 2017

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title

Type II restriction endonucleases (English)

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5 August 2017

John J Perona

1

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5 August 2017

publication date

1 November 2002

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5 August 2017

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5 August 2017

volume

28

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5 August 2017

issue

3

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5 August 2017

page(s)

353-364

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Structure and function of type II restriction endonucleases

5 August 2017

cites work

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7 January 2021

Structural adaptations in the interaction of EcoRI endonuclease with methylated GAATTC sites.

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7 January 2021

Crystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomerase

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7 January 2021

Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement

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7 January 2021

Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation

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7 January 2021

Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Type II restriction endonucleases: structural, functional and evolutionary relationships

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https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structural-perturbation approaches to thermodynamics of site-specific protein-DNA interactions

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7 January 2021

Protein-DNA recognition complexes: conservation of structure and binding energy in the transition state

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7 January 2021

Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarization

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Specific binding by EcoRV endonuclease to its DNA recognition site GATATC.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Reactions of the eco RV restriction endonuclease with fluorescent oligodeoxynucleotides: identical equilibrium constants for binding to specific and non-specific DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

EcoRV restriction endonuclease binds all DNA sequences with equal affinity

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Magnesium(2+) confers DNA binding specificity to the EcoRV restriction endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

DNA Binding Specificity ofMunI Restriction Endonuclease Is Controlled by pH and Calcium Ions: Involvement of Active Site Carboxylate Residues†

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7 January 2021

The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.

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7 January 2021

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

1 reference

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7 January 2021

Direct measurement of protein binding energetics by isothermal titration calorimetry

1 reference

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7 January 2021

Structural and thermodynamic strategies for site-specific DNA binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Molecular recognition mediated by bound water. A mechanism for star activity of the restriction endonuclease EcoRI

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Heterogeneity in molecular recognition by restriction endonucleases: osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Macromolecular hydration changes associated with BamHI binding and catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure of BamHI bound to nonspecific DNA: a model for DNA sliding

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Role of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT)

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Facilitated distortion of the DNA site enhances EcoRI endonuclease-DNA recognition

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Chiral phosphorothioates as probes of protein interactions with individual DNA phosphoryl oxygens: essential interactions of EcoRI endonuclease with the phosphate at pGAATTC.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

The name is bond--H bond.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Time-resolved fluorescence spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Fluorescence stopped-flow kinetics of the cleavage of synthetic oligodeoxynucleotides by the EcoRI restriction endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Asp34 of PvuII endonuclease is directly involved in DNA minor groove recognition and indirectly involved in catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure of the multimodular endonuclease FokI bound to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Coupling of local folding to site-specific binding of proteins to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Crystallographic snapshots along a protein-induced DNA-bending pathway

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Modes of DNA cleavage by the EcoRV restriction endonuclease.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Buffer effects on EcoRV kinetics as measured by fluorescent staining and digital imaging of plasmid cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Kinetic analysis of a mutational hot spot in the EcoRV restriction endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Catalytic efficiency and sequence selectivity of a restriction endonuclease modulated by a distal manganese ion binding site.

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Continuous spectrophotometric assay for restriction endonucleases using synthetic oligodeoxynucleotides and based on the hyperchromic effect

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Direct Microscopic Observation of the Time Course of Single-Molecule DNA Restriction Reactions We thank Dr. Werner Wolf for helpful discussions and the VW-foundation, Grant No. I/75099 for supporting this work

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Single-molecule fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

The role of metals in catalysis by the restriction endonuclease BamHI

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

PvuII endonuclease contains two calcium ions in active sites

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Structure and Nuclease Activity of Simple Dinuclear Metal Complexes: Quantitative Dissection of the Role of Metal Ions

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Stereochemical outcome of the hydrolysis reaction catalyzed by the EcoRV restriction endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

An isoleucine to leucine mutation that switches the cofactor requirement of the EcoRV restriction endonuclease from magnesium to manganese

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Does the Restriction EndonucleaseEcoRV Employ a Two-Metal-Ion Mechanism for DNA Cleavage?†

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Stringent and relaxed specificities of TaqI endonuclease: interactions with metal cofactors and DNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

DNA cleavage by the EcoRV restriction endonuclease: roles of divalent metal ions in specificity and catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Catalytic roles of divalent metal ions in phosphoryl transfer by EcoRV endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

DNA cleavage by the EcoRV restriction endonuclease: pH dependence and proton transfers in catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Influence of the phosphate backbone on the recognition and hydrolysis of DNA by the EcoRV restriction endonuclease. A study using oligodeoxynucleotide phosphorothioates

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Genetic analysis of the base-specific contacts of BamHI restriction endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

Position and density effects on repression by stationary and mobile DNA-binding proteins

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https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

A mutant of BamHI restriction endonuclease which requires N6-methyladenine for cleavage

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https://api.crossref.org/works/10.1016%2FS1046-2023%2802%2900242-6

7 January 2021

10.1016/S1046-2023(02)00242-6

Identifiers

DOI

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5 August 2017

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