Mapping accessible chromatin regions using Sono-Seq (Q34999369)

5 August 2017

title

Mapping accessible chromatin regions using Sono-Seq (English)

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5 August 2017

Joel Rozowsky

3

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Mark Bender Gerstein

8

object named as

Mark Gerstein

1 reference

5 August 2017

9

Michael Snyder

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5 August 2017

6

Philippe Lefrançois

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5 August 2017

Raymond K Auerbach

1

1 reference

5 August 2017

Ghia Euskirchen

2

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5 August 2017

Nathan Lamarre-Vincent

4

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5 August 2017

Zarmik Moqtaderi

5

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5 August 2017

Kevin Struhl

7

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5 August 2017

language of work or name

English

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publication date

18 August 2009

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Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

number of pages

6

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based on heuristic

inferred from page(s)

published in

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5 August 2017

volume

106

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5 August 2017

issue

35

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5 August 2017

page(s)

14926-14931

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Model-based analysis of ChIP-Seq (MACS)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Polycomb gene expression and histone H3 lysine 27 trimethylation changes during bovine preimplantation development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Open conformation chromatin and pluripotency

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genome-wide mapping of in vivo protein-DNA interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

High-resolution profiling of histone methylations in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Chromatin immunoprecipitation and microarray-based analysis of protein location

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

NCBI GEO: mining tens of millions of expression profiles--database and tools update

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Global changes in STAT target selection and transcription regulation upon interferon treatments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

ChIP-chip: a genomic approach for identifying transcription factor binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736440

8 July 2018

Identifiers

DOI

10.1073/PNAS.0905443106

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5 August 2017

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5 August 2017

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