Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. (Q35004175)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11875036%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

title

Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers (English)

1 reference

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7 December 2019

0 references

2

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7 December 2019

author name string

Dmitri A Papatsenko

1

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7 December 2019

Alex P Lifanov

3

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7 December 2019

Mireille Régnier

4

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7 December 2019

Anna G Nazina

5

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7 December 2019

Claude Desplan

6

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7 December 2019

publication date

1 March 2002

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7 December 2019

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7 December 2019

volume

12

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7 December 2019

issue

3

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7 December 2019

page(s)

470-481

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Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis

7 December 2019

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The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box.

8 July 2018

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A double interaction screen identifies positive and negative ftz gene regulators and ftz-interacting proteins

8 July 2018

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Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients

8 July 2018

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Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo

8 July 2018

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Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

8 July 2018

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8 July 2018

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8 July 2018

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A binding site for multiple transcriptional activators in the fushi tarazu proximal enhancer is essential for gene expression in vivo

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Regulation of Drosophila spalt gene expression

8 July 2018

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Mechanism and Bicoid-dependent control of hairy stripe 7 expression in the posterior region of the Drosophila embryo

8 July 2018

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Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome

8 July 2018

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8 July 2018

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Conservation and diversification in homeodomain-DNA interactions: a comparative genetic analysis

8 July 2018

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Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo

8 July 2018

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The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

8 July 2018

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The torso response element binds GAGA and NTF-1/Elf-1, and regulates tailless by relief of repression.

8 July 2018

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Multiple proteins interact with the fushi tarazu proximal enhancer

8 July 2018

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

8 July 2018

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Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

8 July 2018

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Sequence analysis of the cis-regulatory regions of the bithorax complex of Drosophila

8 July 2018

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Positioning adjacent pair-rule stripes in the posterior Drosophila embryo.

8 July 2018

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

8 July 2018

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Diffusion-controlled macromolecular interactions

8 July 2018

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

8 July 2018

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Evolutionary conservation of homeodomain-binding sites and other sequences upstream and within the major transcription unit of the Drosophila segmentation gene engrailed

8 July 2018

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Lac repressor-operator interaction: DNA length dependence.

8 July 2018

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8 July 2018

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Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens bicoid and hunchback

8 July 2018

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Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Regulation of even-skipped stripe 2 in the Drosophila embryo

8 July 2018

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Comparison of the predicted and observed secondary structure of T4 phage lysozyme

8 July 2018

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Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

8 July 2018

1 reference

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Regulatory element detection using a probabilistic segmentation model.

26 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155290

ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.

26 October 2018

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Efficient detection of unusual words.

26 October 2018

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Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene

26 October 2018

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hairy stripe 7 element mediates activation and repression in response to different domains and levels of Krüppel in the Drosophila embryo.

26 October 2018

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Identification of regulatory regions driving the expression of the Drosophila spalt complex at different developmental stages.

26 October 2018

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SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

26 October 2018

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Regulation of the spalt/spalt-related gene complex and its function during sensory organ development in the Drosophila thorax.

26 October 2018

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Ftz-F1 is a cofactor in Ftz activation of the Drosophila engrailed gene.

26 October 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

26 October 2018

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A web site for the computational analysis of yeast regulatory sequences

26 October 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/11875036

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Regulation of runt transcription by Drosophila segmentation genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11875036

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.212502

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11875036%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11875036%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

1 reference