The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups (Q35006798)

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26 February 2020

title

The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups (English)

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26 February 2020

0 references

7

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26 February 2020

author name string

Guangjun Yin

1

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26 February 2020

Hongliang Xu

2

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26 February 2020

Shuyang Xiao

3

1 reference

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26 February 2020

Yajuan Qin

4

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26 February 2020

Yaxuan Li

5

1 reference

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26 February 2020

Yueming Yan

6

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26 February 2020

publication date

3 October 2013

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26 February 2020

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26 February 2020

volume

13

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26 February 2020

page(s)

148

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Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice.

26 February 2020

cites work

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8 July 2018

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The role of WRKY transcription factors in plant immunity

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A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments

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Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

8 July 2018

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Networks of WRKY transcription factors in defense signaling.

8 July 2018

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8 July 2018

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Isolation and characterization of a Vitis vinifera transcription factor, VvWRKY1, and its effect on responses to fungal pathogens in transgenic tobacco plants

8 July 2018

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The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

8 July 2018

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Light-regulated transcriptional networks in higher plants

8 July 2018

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DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein

8 July 2018

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MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis

8 July 2018

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The Genomes of Oryza sativa: a history of duplications

8 July 2018

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Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

8 July 2018

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The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants

8 July 2018

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Genomic organization of the Neurospora crassa gsn gene: possible involvement of the STRE and HSE elements in the modulation of transcription during heat shock.

8 July 2018

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WRKY transcription factors: from DNA binding towards biological function

8 July 2018

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Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

8 July 2018

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8 July 2018

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The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

8 July 2018

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A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter

8 July 2018

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Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response

8 July 2018

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8 July 2018

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Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam

8 July 2018

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Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray

8 July 2018

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Cloning and characterization of a thermal hysteresis (antifreeze) protein with DNA-binding activity from winter bittersweet nightshade, Solanum dulcamara

8 July 2018

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The probability of preservation of a newly arisen gene duplicate

8 July 2018

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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

8 July 2018

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

8 July 2018

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The evolutionary fate and consequences of duplicate genes

8 July 2018

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A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp. atroseptica and Phytophthora infestans and is coregulated with class I endochitinase expression

8 July 2018

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Isolation and characterization of two pathogen- and salicylic acid-induced genes encoding WRKY DNA-binding proteins from tobacco

8 July 2018

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The WRKY superfamily of plant transcription factors.

8 July 2018

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Identification of rice blast fungal elicitor-responsive genes by differential display analysis

8 July 2018

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Rapid systemic accumulation of transcripts encoding a tobacco WRKY transcription factor upon wounding

8 July 2018

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

8 July 2018

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The probability of duplicate gene preservation by subfunctionalization

8 July 2018

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Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors

8 July 2018

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An oligo selection procedure for identification of sequence-specific DNA-binding activities associated with the plant defence response

8 July 2018

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PAML: a program package for phylogenetic analysis by maximum likelihood

8 July 2018

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Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea.

8 July 2018

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Characterization of a zinc-dependent transcriptional activator from Arabidopsis

8 July 2018

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Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes

8 July 2018

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Phytohormone control of the tobacco anionic peroxidase promoter

8 July 2018

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The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins

8 July 2018

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Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of alpha-Amy2 genes

8 July 2018

1 reference

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Molecular characterization and genetic mapping of two clusters of genes encoding chlorophyll a/b-binding proteins in Lycopersicon esculentum (tomato).

8 July 2018

1 reference

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A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements.

8 July 2018

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Alternative mRNA splicing generates the two ribulosebisphosphate carboxylase/oxygenase activase polypeptides in spinach and Arabidopsis

8 July 2018

1 reference

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Regulation and interaction of multiple protein factors with the proximal promoter regions of a rice high pI alpha-amylase gene

8 July 2018

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Secondary structural complementarity between DNA and proteins

8 July 2018

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Leucine zipper-containing WRKY proteins widen the spectrum of immediate early elicitor-induced WRKY transcription factors in parsley.

8 July 2018

1 reference

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Identification of early-responsive genes associated with the hypersensitive response to tobacco mosaic virus and characterization of a WRKY-type transcription factor in tobacco plants

21 January 2018

1 reference

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Molecular cloning and mRNA expression of geraniol-inducible genes in cultured shoot primordia of Matricaria chamomilla

21 January 2018

1 reference

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Characterization of a WRKY transcription factor expressed in late torpedo-stage embryos of Solanum chacoense

21 January 2018

1 reference

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Identification of a transcription factor specifically expressed at the onset of leaf senescence

21 January 2018

1 reference

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TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor.

21 January 2018

1 reference

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A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells

21 January 2018

1 reference

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Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis

21 January 2018

1 reference

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Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence

21 January 2018

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Arabidopsis DNA encoding two desiccation-responsive rd29 genes.

21 January 2018

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A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

21 January 2018

1 reference

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Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

21 January 2018

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Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins

21 January 2018

1 reference

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Comparative analysis of the receptor-like kinase family in Arabidopsis and rice

21 January 2018

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An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

21 January 2018

1 reference

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Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

26 October 2018

1 reference

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Ancestral multipartite units in light-responsive plant promoters have structural features correlating with specific phototransduction pathways

26 October 2018

1 reference

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Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5' upstream regions of genes coding for sporamin and beta-amylase from sweet potato.

26 October 2018

1 reference

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Statistical methods for testing functional divergence after gene duplication

26 October 2018

1 reference

12 December 2020

Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean

1 reference

12 December 2020

Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression

1 reference

12 December 2020

Evolutionary selection pressure of forkhead domain and functional divergence

1 reference

12 December 2020

Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-13-148

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24088323%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

26 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24088323%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

24088323

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24088323%20AND%20SRC:MED&resulttype=core&format=json