A natural coarse graining for simulating large biomolecular motion (Q35012272)

5 August 2017

A natural coarse graining for simulating large biomolecular motion (English)

1 reference

5 August 2017

Holger Gohlke

1

1 reference

PubMed ID

16815893

5 August 2017

M F Thorpe

series ordinal

2

1 reference

PubMed ID

16815893

5 August 2017

language of work or name

English

0 references

publication date

30 June 2006

1 reference

5 August 2017

6

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

5 August 2017

91

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5 August 2017

6

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5 August 2017

2115-2120

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Stochastic kinetics of viral capsid assembly based on detailed protein structures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

The Database of Macromolecular Motions: new features added at the decade mark

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Protein structure prediction using Rosetta

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Architecture of the photosynthetic oxygen-evolving center

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Protein unfolding: rigidity lost

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Generalized-ensemble algorithms for molecular simulations of biopolymers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Crystal structure of the ribosome at 5.5 A resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Anisotropy of fluctuation dynamics of proteins with an elastic network model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

X-ray crystallographic structure of the Norwalk virus capsid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Computer simulation of protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Folding and stability of helical proteins: carp myogen

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Constrained geometric simulation of diffusive motion in proteins

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Building-block approach for determining low-frequency normal modes of macromolecules.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Noninteracting local‐structure model of folding and unfolding transition in globular proteins. I. Formulation

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Noninteracting local‐structure model of folding and unfolding transition in globular proteins. II. Application to two‐dimensional lattice proteins

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557556

Protein flexibility and dynamics using constraint theory

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16815893

12 December 2020

inferred from PubMed ID database lookup

Internal motions of antibody molecules

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16815893

12 December 2020

inferred from PubMed ID database lookup

Generic rigidity percolation: The pebble game

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16815893

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1529/BIOPHYSJ.106.083568

1 reference

5 August 2017

1 reference

5 August 2017

1 reference

PubMed ID

16815893