Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types (Q35020468)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138507%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types (English)

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28 February 2020

0 references

1

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28 February 2020

Peter R Reeves

5

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28 February 2020

6

Ruiting Lan

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28 February 2020

author name string

Sophie Octavia

2

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28 February 2020

Lu Feng

3

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28 February 2020

Bin Liu

4

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28 February 2020

Lei Wang

7

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28 February 2020

language of work or name

English

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publication date

20 October 2013

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28 February 2020

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28 February 2020

volume

14

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28 February 2020

page(s)

718

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The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

28 February 2020

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Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica Serovar Typhimurium

8 July 2018

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Salmonella phage ST64B encodes a member of the SseK/NleB effector family

8 July 2018

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Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome

8 July 2018

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Single nucleotide polymorphism typing of global Salmonella enterica serovar Typhi isolates by use of a hairpin primer real-time PCR assay

8 July 2018

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

8 July 2018

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8 July 2018

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Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

8 July 2018

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Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

8 July 2018

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Short-term signatures of evolutionary change in the Salmonella enterica serovar typhimurium 14028 genome

8 July 2018

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The Sequence Alignment/Map format and SAMtools

8 July 2018

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Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms

8 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

8 July 2018

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Beta-lactam resistance response triggered by inactivation of a nonessential penicillin-binding protein

8 July 2018

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Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

8 July 2018

1 reference

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High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

8 July 2018

1 reference

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SOAP: short oligonucleotide alignment program

8 July 2018

1 reference

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Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Río Tinto (SW, Spain).

8 July 2018

1 reference

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Role in virulence and protective efficacy in pigs of Salmonella enterica serovar Typhimurium secreted components identified by signature-tagged mutagenesis

8 July 2018

1 reference

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The inflammation-associated Salmonella SopA is a HECT-like E3 ubiquitin ligase

8 July 2018

1 reference

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Proteomic analysis of Campylobacter jejuni 11168 biofilms reveals a role for the motility complex in biofilm formation

8 July 2018

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Functional characterization of the FimH adhesin from Salmonella enterica serovar Enteritidis.

8 July 2018

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Adaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium

8 July 2018

1 reference

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Recognizing the pseudogenes in bacterial genomes

8 July 2018

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The Salmonella enterica serotype Typhimurium lpf, bcf, stb, stc, std, and sth fimbrial operons are required for intestinal persistence in mice

8 July 2018

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Role of the Escherichia coli glgX gene in glycogen metabolism

8 July 2018

1 reference

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Identification of host-specific colonization factors of Salmonella enterica serovar Typhimurium.

8 July 2018

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Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

8 July 2018

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Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing

8 July 2018

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Resuscitation of a defective prophage in Salmonella cocultures

8 July 2018

1 reference

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Lack of association between long-term illness and infectious intestinal disease in New Zealand.

8 July 2018

1 reference

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Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes

8 July 2018

1 reference

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Molecular characterization of a prophage of Salmonella enterica serotype Typhimurium DT104.

8 July 2018

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Host adaptation of pigeon isolates of Salmonella enterica subsp. enterica serovar Typhimurium variant Copenhagen phage type 99 is associated with enhanced macrophage cytotoxicity

8 July 2018

1 reference

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The SopEPhi phage integrates into the ssrA gene of Salmonella enterica serovar Typhimurium A36 and is closely related to the Fels-2 prophage

8 July 2018

1 reference

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Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites.

8 July 2018

1 reference

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Identification of Escherichia coli genes that are specifically expressed in a murine model of septicemic infection

8 July 2018

1 reference

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Salmonella enterica serotype Typhimurium and its host-adapted variants.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853940

OmpC is the receptor for Gifsy-1 and Gifsy-2 bacteriophages of Salmonella

8 July 2018

1 reference

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Tissue-specific gene expression identifies a gene in the lysogenic phage Gifsy-1 that affects Salmonella enterica serovar typhimurium survival in Peyer's patches.

8 July 2018

1 reference

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Epidemic salmonella typhimurium DT 104--a truly international multiresistant clone

8 July 2018

1 reference

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Identification of SopE2, a Salmonella secreted protein which is highly homologous to SopE and involved in bacterial invasion of epithelial cells

8 July 2018

1 reference

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Salmonella typhimurium leucine-rich repeat proteins are targeted to the SPI1 and SPI2 type III secretion systems

8 July 2018

1 reference

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Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain

8 July 2018

1 reference

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The virulence plasmid of Salmonella typhimurium is self-transmissible

8 July 2018

1 reference

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Evolution of host adaptation in Salmonella enterica

8 July 2018

1 reference

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Salmonella typhimurium encodes an SdiA homolog, a putative quorum sensor of the LuxR family, that regulates genes on the virulence plasmid

8 July 2018

1 reference

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Avirulence of LT2 strains of Salmonella typhimurium results from a defective rpoS gene

8 July 2018

1 reference

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An altered rpoS allele contributes to the avirulence of Salmonella typhimurium LT2.

8 July 2018

1 reference

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The pef fimbrial operon of Salmonella typhimurium mediates adhesion to murine small intestine and is necessary for fluid accumulation in the infant mouse.

8 July 2018

1 reference

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Natural populations of Escherichia coli and Salmonella typhimurium harbor the same classes of insertion sequences

8 July 2018

1 reference

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The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium

8 July 2018

1 reference

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Nucleotide sequence of a 13.9 kb segment of the 90 kb virulence plasmid of Salmonella typhimurium: the presence of fimbrial biosynthetic genes

8 July 2018

1 reference

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Evolutionary Significance of Accessory DNA Elements in Bacteria

8 July 2018

1 reference

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The Salmonella typhimurium virulence plasmid complement resistance gene rck is homologous to a family of virulence-related outer membrane protein genes, including pagC and ail

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853940

Selection for citrate synthase deficiency in icd mutants of Escherichia coli

8 July 2018

1 reference

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Bacteriophage-typing designations of Salmonella typhimurium

8 July 2018

1 reference

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An alternating least squares approach to inferring phylogenies from pairwise distances.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-718

Heterogeneity in expression of lipopolysaccharide by strains of Salmonella enterica serotype Typhimurium definitive phage type 104 and related phage types.

21 January 2018

1 reference

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Identification and characterization of the first class of potent bacterial acetyl-CoA carboxylase inhibitors with antibacterial activity

21 January 2018

1 reference

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Inducible prophages contribute to Salmonella virulence in mice

21 January 2018

1 reference

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Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella

21 January 2018

1 reference

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Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates.

21 January 2018

1 reference

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Multiple insertions of fimbrial operons correlate with the evolution of Salmonella serovars responsible for human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-718

NapF is a cytoplasmic iron-sulfur protein required for Fe-S cluster assembly in the periplasmic nitrate reductase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-718

The NapF protein of the Escherichia coli periplasmic nitrate reductase system: demonstration of a cytoplasmic location and interaction with the catalytic subunit, NapA.

21 January 2018

1 reference

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Outbreaks of Salmonella Typhimurium phage type 197 of multiple genotypes linked to an egg producer.

21 January 2018

1 reference

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25 October 2018

Identifiers

DOI

10.1186/1471-2164-14-718

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138507%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138507%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

24138507

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138507%20AND%20SRC:MED&resulttype=core&format=json