Whole-genome comparison of Aspergillus fumigatus strains serially isolated from patients with aspergillosis. (Q35036194)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Whole-genome comparison of Aspergillus fumigatus strains serially isolated from patients with aspergillosis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

14-alpha sterol demethylase

16 February 2020

main subject

Aspergillus fumigatus

0 references

aspergillosis

0 references

1 reference

GeneDB

bZip transcription factor, putative

6 February 2019

1 reference

GeneDB

Putative aldehyde dehydrogenase

6 February 2019

1 reference

GeneDB

6 February 2019

whole genome sequencing

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

author name string

Hiroki Takahashi

2

1 reference

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16 February 2020

Akira Watanabe

3

1 reference

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16 February 2020

Azusa Takahashi-Nakaguchi

4

1 reference

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16 February 2020

Susumu Kawamoto

5

1 reference

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16 February 2020

Katsuhiko Kamei

6

1 reference

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16 February 2020

Tohru Gonoi

7

1 reference

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16 February 2020

language of work or name

English

0 references

publication date

17 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

Journal of Clinical Microbiology

16 February 2020

published in

1 reference

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16 February 2020

volume

52

1 reference

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16 February 2020

page(s)

4202-4209

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16 February 2020

issue

12

1 reference

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NikA/TcsC histidine kinase is involved in conidiation, hyphal morphology, and responses to osmotic stress and antifungal chemicals in Aspergillus fumigatus

16 February 2020

cites work

1 reference

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

8 July 2018

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Azole resistance in Aspergillus fumigatus: a growing public health concern.

8 July 2018

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8 July 2018

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Azole resistant Aspergillus fumigatus: an emerging problem.

8 July 2018

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Comparative Genomics of Serial Isolates of Cryptococcus neoformans Reveals Gene Associated With Carbon Utilization and Virulence.

8 July 2018

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Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing

8 July 2018

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Correlation between triazole treatment history and susceptibility in clinically isolated Aspergillus fumigatus.

8 July 2018

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

8 July 2018

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Fast gapped-read alignment with Bowtie 2

8 July 2018

1 reference

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Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity

8 July 2018

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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

8 July 2018

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Rapid induction of multiple resistance mechanisms in Aspergillus fumigatus during azole therapy: a case study and review of the literature

8 July 2018

1 reference

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Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy

8 July 2018

1 reference

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8 July 2018

1 reference

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Acquired antifungal drug resistance in Aspergillus fumigatus: epidemiology and detection.

8 July 2018

1 reference

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Frequency and evolution of Azole resistance in Aspergillus fumigatus associated with treatment failure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

MLST versus microsatellites for typing Aspergillus fumigatus isolates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Revised definitions of invasive fungal disease from the European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Treatment of aspergillosis: clinical practice guidelines of the Infectious Diseases Society of America

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Yeast activator proteins and stress response: an overview

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Gene prediction with a hidden Markov model and a new intron submodel

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Mutations in Aspergillus fumigatus resulting in reduced susceptibility to posaconazole appear to be restricted to a single amino acid in the cytochrome P450 14alpha-demethylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Chronic forms of pulmonary aspergillosis

8 July 2018

1 reference

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Genetic involvement of a cAMP-dependent protein kinase in a G protein signaling pathway regulating morphological and chemical transitions in Aspergillus nidulans

8 July 2018

1 reference

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Aspergillus fumigatus and aspergillosis

8 July 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Itraconazole resistance in Aspergillus fumigatus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Application of polymerase chain reaction to fingerprinting Aspergillus fumigatus by random amplification of polymorphic DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Antifungal susceptibility of Aspergillus fumigatus clinical isolates collected from various areas in Japan.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Characterization of the velvet regulators in Aspergillus fumigatus.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

In vitro-in vivo correlation of voriconazole resistance due to G448S mutation (cyp51A gene) in Aspergillus fumigatus

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Afyap1, encoding a bZip transcriptional factor of Aspergillus fumigatus, contributes to oxidative stress response but is not essential to the virulence of this pathogen in mice immunosuppressed by cyclophosphamide and triamcinolone.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Mutations in the cyp51A gene and susceptibility to itraconazole in Aspergillus fumigatus serially isolated from a patient with lung aspergilloma

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

Major variations inAspergillus fumigatusarising within aspergillomas in chronic pulmonary aspergillosis

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4313286

DNA fingerprinting of Aspergillus fumigatus isolates from patients with aspergilloma

9 December 2018

1 reference

12 December 2020

Characterization of the bZip-type transcription factor NapA with reference to oxidative stress response in Aspergillus nidulans

1 reference

12 December 2020

Invasive aspergillosis

1 reference

12 December 2020

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

1 reference

12 December 2020

Identifiers

DOI

10.1128/JCM.01105-14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232160%20AND%20SRC:MED&resulttype=core&format=json