Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. (Q35040942)

6 August 2017

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. (English)

1 reference

6 August 2017

0 references

0 references

Mads Beich-Frandsen

1

0 references

Branislav Večerek

Branislav Vecerek

2

0 references

Lukas Rajkowitsch

Lukas Rajkowitsch

7

0 references

Bonnie Ann Wallace

B A Wallace

10

0 references

Kristina Djinovic-Carugo

Kristina Djinovic-Carugo

14

0 references

Udo Bläsi

13

Udo Bläsi

1 reference

6 August 2017

8

Andrew J Miles

1 reference

6 August 2017

Petr V Konarev

3

1 reference

6 August 2017

Björn Sjöblom

4

1 reference

6 August 2017

Karin Kloiber

5

1 reference

6 August 2017

Hermann Hämmerle

6

1 reference

6 August 2017

Georg Kontaxis

9

1 reference

6 August 2017

Dimitri I Svergun

11

1 reference

6 August 2017

Robert Konrat

12

1 reference

6 August 2017

language of work or name

English

0 references

publication date

17 February 2011

1 reference

6 August 2017

Nucleic Acids Research

1 reference

6 August 2017

39

1 reference

6 August 2017

11

1 reference

6 August 2017

4900-4915

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

6 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The structures of mutant forms of Hfq fromPseudomonas aeruginosareveal the importance of the conserved His57 for the protein hexamer organization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Expression, crystallization and preliminary crystallographic analysis of RNA-binding protein Hfq (YmaH) from Bacillus subtilis in complex with an RNA aptamer.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Structure/function implications in a dynamic complex of the intrinsically disordered Sic1 with the Cdc4 subunit of an SCF ubiquitin ligase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The protein meta-structure: a novel concept for chemical and molecular biology.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Structural polymorphism of 441-residue tau at single residue resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Noncoding RNA control of the making and breaking of sugars

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Solution conformation and thermodynamic characteristics of RNA binding by the splicing factor U2AF65

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The Jpred 3 secondary structure prediction server

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The C-terminal domain of Escherichia coli Hfq is required for regulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Small RNA regulators and the bacterial response to stress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

RNA chaperone activity and RNA-binding properties of the E. coli protein StpA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Translation initiation and the fate of bacterial mRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Global rigid body modeling of macromolecular complexes against small-angle scattering data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Micros for microbes: non-coding regulatory RNAs in bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Translational autocontrol of the Escherichia coli hfq RNA chaperone gene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Intrinsically unstructured proteins and their functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Release of long-range tertiary interactions potentiates aggregation of natively unstructured alpha-synuclein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The small RNA regulators of Escherichia coli: roles and mechanisms*

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

CDtool-an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The role of structural disorder in the function of RNA and protein chaperones

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Anchor residues in protein-protein interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The C-terminal domain of Escherichia coli Hfq increases the stability of the hexamer.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Regulatory roles for small RNAs in bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

RNA chaperone activity of the Sm-like Hfq protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Predicted structure and phyletic distribution of the RNA-binding protein Hfq.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Coupling of folding and binding for unstructured proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Intrinsically disordered protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Hfq is necessary for regulation by the untranslated RNA DsrA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Recognition between flexible protein molecules: induced and assisted folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The PSIPRED protein structure prediction server

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Analyzing protein circular dichroism spectra for accurate secondary structures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Spectral density function mapping using 15N relaxation data exclusively

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

On the facultative requirement of the bacterial RNA chaperone, Hfq.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Functional replacement of the Escherichia coli hfq gene by the homologue of Pseudomonas aeruginosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Estimation of globular protein secondary structure from circular dichroism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

A reference database for circular dichroism spectroscopy covering fold and secondary structure space.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Prediction of disordered regions in proteins based on the meta approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Structure, function, and dynamics of the dimerization and DNA-binding domain of oncogenic transcription factor v-Myc

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Preformed structural elements feature in partner recognition by intrinsically unstructured proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Three-dimensional triple-resonance NMR Spectroscopy of isotopically enriched proteins. 1990.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113564

Structure ofPseudomonas aeruginosaHfq protein

25 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Proton-proton correlation via carbon-carbon couplings: a three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1346

Structural and thermodynamic strategies for site-specific DNA binding proteins

21 January 2018

1 reference

12 December 2020

Functional effects of variants of the RNA chaperone Hfq

1 reference

12 December 2020

Coupling RNA annealing and strand displacement: a FRET-based microplate reader assay for RNA chaperone activity

1 reference

12 December 2020

Backbone assignment of osteopontin, a cytokine and cell attachment protein implicated in tumorigenesis

1 reference

12 December 2020

Estimation of protein secondary structure and error analysis from circular dichroism spectra

1 reference

12 December 2020

Folding of the mitochondrial proton adenosine triphosphatase proteolipid channel in phospholipid vesicles

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ1346

1 reference

6 August 2017

1 reference

6 August 2017

1 reference