The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity (Q35041943)

6 August 2017

title

The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity (English)

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6 August 2017

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3

Anders Stockmarr

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6 August 2017

2

Kerstin Skovgaard

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6 August 2017

author name string

Marie Louise Hermann-Bank

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1

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6 August 2017

Niels Larsen

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4

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6 August 2017

Lars Mølbak

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5

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6 August 2017

language of work or name

English

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publication date

14 November 2013

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6 August 2017

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6 August 2017

volume

14

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6 August 2017

page(s)

788

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describes a project that uses

6 August 2017

massive parallel sequencing

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'Omics' of the mammalian gut--new insights into function

inferred from title

cites work

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Application of phylogenetic microarrays to interrogation of human microbiota

8 July 2018

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DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

8 July 2018

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Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii

8 July 2018

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8 July 2018

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8 July 2018

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Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities

8 July 2018

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Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR.

8 July 2018

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8 July 2018

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Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces

8 July 2018

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8 July 2018

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Microbial community and physicochemical analysis of an industrial waste gas biofilter and design of 16S rRNA-targeting oligonucleotide probes

8 July 2018

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Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces

8 July 2018

1 reference

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PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database

8 July 2018

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

8 July 2018

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Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited

8 July 2018

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Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

8 July 2018

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Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.

8 July 2018

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A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis.

8 July 2018

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In situ detection of an uncultured predominant bacillus in Dutch grassland soils.

8 July 2018

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Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Spirochetes from digital dermatitis lesions in cattle are closely related to treponemes associated with human periodontitis

8 July 2018

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Characterization of predominant bacteria from the colons of normal and dysenteric pigs

8 July 2018

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Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells

8 July 2018

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Archaea in coastal marine environments

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Reverse transcriptase real-time PCR for detection and quantification of viable Campylobacter jejuni directly from poultry faecal samples.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Quantification of total bacteria, enterobacteria and lactobacilli populations in pig digesta by real-time PCR.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879714

Quantification of Bifidobacterium spp. and Lactobacillus spp. in rat fecal samples by real-time PCR

25 October 2018

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12 December 2020

A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization

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12 December 2020

Purification of nucleic acids by extraction with phenol:chloroform

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12 December 2020

Comparison of real-time PCR with SYBR Green I or 5'-nuclease assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria

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12 December 2020

Implantation and development of the gut flora in the newborn animal

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12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-788

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6 August 2017

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6 August 2017

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