DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families (Q35047158)

6 August 2017

DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families (English)

1 reference

6 August 2017

Plasmodium falciparum

0 references

Michael Lisby

4

0 references

Ali Salanti

Ali Salanti

5

0 references

Thor G. Theander

Thor G Theander

10

0 references

Jakob S Jespersen

Jakob S Jespersen

7

0 references

Anders Gorm Pedersen

Anders Gorm Pedersen

11

0 references

Thomas Lavstsen

2

Thomas Lavstsen

1 reference

6 August 2017

3

Thomas S Rask

1 reference

Adam Frederik Sander Bertelsen

6 August 2017

1

Adam F Sander

1 reference

6 August 2017

Sarah L Fordyce

6

1 reference

6 August 2017

Richard Carter

8

1 reference

6 August 2017

Kirk W Deitsch

9

1 reference

6 August 2017

David E Arnot

12

1 reference

6 August 2017

language of work or name

English

0 references

publication date

18 November 2013

1 reference

6 August 2017

Nucleic Acids Research

1 reference

6 August 2017

42

1 reference

6 August 2017

2270-2281

1 reference

6 August 2017

4

1 reference

Creative Commons Attribution 3.0 Unported

6 August 2017

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Mitotic evolution of Plasmodium falciparum shows a stable core genome but recombination in antigen families

8 July 2018

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Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children

8 July 2018

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Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species

8 July 2018

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8 July 2018

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Rich parameterization improves RNA structure prediction

8 July 2018

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Cell biology of homologous recombination in yeast

8 July 2018

1 reference

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High recombination rates and hotspots in a Plasmodium falciparum genetic cross

8 July 2018

1 reference

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Dpb11/TopBP1 plays distinct roles in DNA replication, checkpoint response and homologous recombination

8 July 2018

1 reference

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Folded DNA in action: hairpin formation and biological functions in prokaryotes.

8 July 2018

1 reference

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Molecular mechanisms underlying the control of antigenic variation in African trypanosomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes--divide and conquer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Genome scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin-resistant parasites

8 July 2018

1 reference

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

8 July 2018

1 reference

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TOPO3alpha influences antigenic variation by monitoring expression-site-associated VSG switching in Trypanosoma brucei

8 July 2018

1 reference

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De novo assembly of human genomes with massively parallel short read sequencing

8 July 2018

1 reference

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Fusion of nearby inverted repeats by a replication-based mechanism leads to formation of dicentric and acentric chromosomes that cause genome instability in budding yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Multiple var2csa-type PfEMP1 genes located at different chromosomal loci occur in many Plasmodium falciparum isolates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Human monoclonal IgG selection of Plasmodium falciparum for the expression of placental malaria-specific variant surface antigens

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Adhesion of Plasmodium falciparum-infected erythrocytes to human cells: molecular mechanisms and therapeutic implications.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Fast and accurate short read alignment with Burrows-Wheeler transform

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Ectopic recombination of a malaria var gene during mitosis associated with an altered var switch rate.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

A microhomology-mediated break-induced replication model for the origin of human copy number variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Meeting DNA palindromes head-to-head

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

The Structure of a Chondroitin Sulfate-binding Domain Important in Placental Malaria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Frequent recombination events generate diversity within the multi-copy variant antigen gene families of Plasmodium falciparum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Sub-grouping and sub-functionalization of the RIFIN multi-copy protein family

8 July 2018

1 reference

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Changes in var gene mRNA levels during erythrocytic development in two phenotypically distinct Plasmodium falciparum parasites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Population genomics of the immune evasion (var) genes of Plasmodium falciparum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum: comparisons of geographically diverse isolates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P. falciparum placental sequestration

8 July 2018

1 reference

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The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae

8 July 2018

1 reference

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A family affair: var genes, PfEMP1 binding, and malaria disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

var genes, PfEMP1 and the human host

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Genome sequence of the human malaria parasite Plasmodium falciparum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Functional profiling of the Saccharomyces cerevisiae genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Multiple heterologies increase mitotic double-strand break-induced allelic gene conversion tract lengths in yeast.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

An allele of RFA1 suppresses RAD52-dependent double-strand break repair in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Antigenic variation in malaria: in situ switching, relaxed and mutually exclusive transcription of var genes during intra-erythrocytic development in Plasmodium falciparum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Separation and mapping of chromosomes of parasitic protozoa.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Parasite antigens on the infected red cell surface are targets for naturally acquired immunity to malaria.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Genomic representation of var gene sequences in Plasmodium falciparum field isolates from different geographic regions.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

A developmental defect in Plasmodium falciparum male gametogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of plasmodium falciparum-infected erythrocytes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Identification of the meiotic division of malarial parasites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Genetic analysis of the human malaria parasite plasmodium falciparum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Improved method for high efficiency transformation of intact yeast cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936766

Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Var gene diversity in Plasmodium falciparum is generated by frequent recombination events.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Analysis of Plasmodium falciparum PfEMP-1/var genes suggests that recombination rearranges constrained sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Human malaria parasites in continuous culture. 1976.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Structural basis for Duffy recognition by the malaria parasite Duffy-binding-like domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Viability of λ phages carrying a perfect palindrome in the absence of recombination nucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Template switching during break-induced replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

A genetic locus on Plasmodium falciparum chromosome 12 linked to a defect in mosquito-infectivity and male gametogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Random mating in a natural population of the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

Mating patterns in malaria parasite populations of Papua New Guinea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1174

TTA.TAA triplet repeats in plasmids form a non-H bonded structure

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24253306

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Plasmodium falciparum:Assignment of Microsatellite Markers to Chromosomes by PFG–PCR

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24253306

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT1174

1 reference

6 August 2017

1 reference

6 August 2017

1 reference