StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes (Q35048361)

6 August 2017

StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes (English)

1 reference

6 August 2017

Timo R Maarleveld

1

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Frank J Bruggeman

series ordinal

3

object named as

Frank J Bruggeman

1 reference

6 August 2017

Brett G Olivier

2

1 reference

PubMed ID

24260203

6 August 2017

language of work or name

English

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publication date

18 November 2013

1 reference

6 August 2017

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6 August 2017

8

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6 August 2017

11

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6 August 2017

e79345

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Creative Commons Attribution 4.0 International

6 August 2017

start time

18 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

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StochKit2: software for discrete stochastic simulation of biochemical systems with events

8 July 2018

1 reference

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Cellular decision making and biological noise: from microbes to mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Elongation dynamics shape bursty transcription and translation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Analytical distributions for stochastic gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Nature, nurture, or chance: stochastic gene expression and its consequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

LibSBML: an API library for SBML.

8 July 2018

1 reference

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Facile: a command-line network compiler for systems biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Stochastic simulation of chemical kinetics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

COPASI--a COmplex PAthway SImulator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Efficient step size selection for the tau-leaping simulation method

8 July 2018

1 reference

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Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited

8 July 2018

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Real-time kinetics of gene activity in individual bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832486

Modelling cellular systems with PySCeS.

8 July 2018

1 reference

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

8 July 2018

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STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.

8 July 2018

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iBioSim: a tool for the analysis and design of genetic circuits.

21 January 2018

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Matplotlib: A 2D Graphics Environment

21 January 2018

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Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

21 January 2018

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The SBML discrete stochastic models test suite.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0079345

The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression.

21 January 2018

1 reference

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Dizzy: stochastic simulation of large-scale genetic regulatory networks

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24260203

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Snoopy--a unifying Petri net framework to investigate biomolecular networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24260203

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0079345

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference

PubMed ID

24260203