Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus). (Q35066436)

6 August 2017

title

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus). (English)

1 reference

Eastern Red-backed Salamander

6 August 2017

main subject

0 references

1 reference

5

1 reference

6 August 2017

Douglas C Woodhams

2

0 references

Laura Wegener Parfrey

series ordinal

3

object named as

Laura Wegener Parfrey

1 reference

6 August 2017

6

Valerie McKenzie

1 reference

6 August 2017

7

Reid N Harris

1 reference

6 August 2017

Andrew H Loudon

1

1 reference

6 August 2017

Holly Archer

series ordinal

4

1 reference

6 August 2017

publication date

12 December 2013

1 reference

6 August 2017

1 reference

6 August 2017

volume

8

1 reference

6 August 2017

issue

4

1 reference

6 August 2017

page(s)

830-840

1 reference

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Tolerance of fungal infection in European water frogs exposed to Batrachochytrium dendrobatidis after experimental reduction of innate immune defenses.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Towards a better understanding of the use of probiotics for preventing chytridiomycosis in Panamanian golden frogs.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Composition of human skin microbiota affects attractiveness to malaria mosquitoes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Moving pictures of the human microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The generation and maintenance of diversity in microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Cutaneous bacteria of the redback salamander prevent morbidity associated with a lethal disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

QIIME allows analysis of high-throughput community sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

PyNAST: a flexible tool for aligning sequences to a template alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Addition of antifungal skin bacteria to salamanders ameliorates the effects of chytridiomycosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Diversity of cutaneous bacteria with antifungal activity isolated from female four-toed salamanders

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The human microbiome project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Bacteroides thetaiotaomicron in the gut: molecular aspects of their interaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

The role of microorganisms in coral health, disease and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Biological control of soil-borne pathogens by fluorescent pseudomonads

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Prokaryotes: the unseen majority

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

A novel subtilisin-like serine protease of Batrachochytrium dendrobatidis is induced by thyroid hormone and degrades antimicrobial peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Aligning short reads to reference alignments and trees

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Emerging infectious disease as a proximate cause of amphibian mass mortality

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

A DNA-based assay identifies Batrachochytrium dendrobatidis in amphibians.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960541

Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog, Rana muscosa

27 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24335825

12 December 2020

inferred from PubMed ID database lookup

Humpback whales harbour a combination of specific and variable skin bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24335825

12 December 2020

inferred from PubMed ID database lookup

Postrelease Movements of Captive-Reared Ozark Hellbenders (Cryptobranchus alleganiensis bishopi)

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

7 January 2021

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

1 reference

7 January 2021

Common Cutaneous Bacteria from the Eastern Red-Backed Salamander Can Inhibit Pathogenic Fungi

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

7 January 2021

Experimental Repatriation of Boreal Toad (Bufo boreas) Eggs, Metamorphs, and Adults in Rocky Mountain National Park

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.200

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2013.200

1 reference

6 August 2017

1 reference

6 August 2017

1 reference