Molecular evolution meets the genomics revolution (Q35074873)

6 August 2017

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title

Molecular evolution meets the genomics revolution (English)

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6 August 2017

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1

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6 August 2017

Wen-Hsiung Li

2

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language of work or name

English

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publication date

1 March 2003

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6 August 2017

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6 August 2017

33 Suppl

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6 August 2017

255-265

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https://scigraph.springernature.com/pub.10.1038/ng1088

6 August 2017

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cites work

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

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7 January 2021

Estimating the total number of nucleotide substitutions since the common ancestor of a pair of homologous genes: comparison of several methods and three beta hemoglobin messenger RNA's

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7 January 2021

Pseudogenes as a paradigm of neutral evolution

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7 January 2021

Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene

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7 January 2021

Evolution of novel genes

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7 January 2021

The evolutionary fate and consequences of duplicate genes

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7 January 2021

Yesterday's polyploids and the mystery of diploidization

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7 January 2021

Extensive genomic duplication during early chordate evolution

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7 January 2021

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

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7 January 2021

Evidence of en bloc duplication in vertebrate genomes

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7 January 2021

Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids.

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7 January 2021

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

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7 January 2021

Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants.

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7 January 2021

Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

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7 January 2021

A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins

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7 January 2021

Birth of two chimeric genes in the Hominidae lineage.

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7 January 2021

Recent duplication, domain accretion and the dynamic mutation of the human genome

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7 January 2021

Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila

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7 January 2021

Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster

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7 January 2021

Exon shuffling by L1 retrotransposition

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7 January 2021

Frequent human genomic DNA transduction driven by LINE-1 retrotransposition

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7 January 2021

Evolution of nitric oxide synthase regulatory genes by DNA inversion

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7 January 2021

Positive selection of a gene family during the emergence of humans and African apes

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7 January 2021

Genomic structure and evolutionary context of the human feline leukemia virus subgroup C receptor (hFLVCR) gene: evidence for block duplications and de novo gene formation within duplicons of the hFLVCR locus

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7 January 2021

Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish

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7 January 2021

Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod

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7 January 2021

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

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7 January 2021

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

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7 January 2021

Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis

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7 January 2021

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

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7 January 2021

Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes-specific genes.

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7 January 2021

Adaptive protein evolution at the Adh locus in Drosophila

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7 January 2021

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

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7 January 2021

A method for detecting positive selection at single amino acid sites

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7 January 2021

Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

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7 January 2021

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

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7 January 2021

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

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7 January 2021

Positive Darwinian selection after gene duplication in primate ribonuclease genes

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7 January 2021

Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey

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7 January 2021

Causes of HIV diversity

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7 January 2021

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

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7 January 2021

Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin.

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7 January 2021

All males are not created equal: fertility differences depend on gamete recognition polymorphisms in sea urchins

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7 January 2021

Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila.

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7 January 2021

Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism

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7 January 2021

Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila

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7 January 2021

Chorionic gonadotropin has a recent origin within primates and an evolutionary history of selection

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7 January 2021

Episodic adaptive evolution of primate lysozymes.

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7 January 2021

Evolutionary Rate at the Molecular Level

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7 January 2021

Adaptive protein evolution in Drosophila

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7 January 2021

Testing the neutral theory of molecular evolution with genomic data from Drosophila.

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7 January 2021

Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome

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7 January 2021

Strand asymmetries in DNA evolution

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7 January 2021

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

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7 January 2021

Asymmetric substitution patterns in the two DNA strands of bacteria

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7 January 2021

The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes

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7 January 2021

Ongoing evolution of strand composition in bacterial genomes

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7 January 2021

Strand asymmetry in human mitochondrial DNA mutations

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7 January 2021

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

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7 January 2021

Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences

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7 January 2021

Comparative DNA analysis across diverse genomes.

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7 January 2021

Strand symmetry around the beta-globin origin of replication in primates.

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7 January 2021

Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome?

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7 January 2021

Strand compositional asymmetry in bacterial and large viral genomes

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7 January 2021

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

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7 January 2021

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

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7 January 2021

Replicational and transcriptional selection on codon usage in Borrelia burgdorferi

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7 January 2021

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases

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7 January 2021

Replication orientation affects the rate and direction of bacterial gene evolution

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7 January 2021

Evolution rates of genes on leading and lagging DNA strands

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7 January 2021

The rate of spontaneous mutation of a human gene

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7 January 2021

Male-driven molecular evolution: a model and nucleotide sequence analysis

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7 January 2021

Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis

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7 January 2021

Evidence for a selectively favourable reduction in the mutation rate of the X chromosome

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7 January 2021

Male-driven evolution of DNA sequences in birds

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7 January 2021

Strong male-driven evolution of DNA sequences in humans and apes

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7 January 2021

Why the rate of silent codon substitutions is variable within a vertebrate's genome.

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7 January 2021

Mutation rates differ among regions of the mammalian genome

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7 January 2021

Chromosomal location effects on gene sequence evolution in mammals

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7 January 2021

Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence

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7 January 2021

Mutation rates in mammalian genomes

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7 January 2021

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7 January 2021

Genomewide comparison of DNA sequences between humans and chimpanzees

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7 January 2021

Assessment of compositional heterogeneity within and between eukaryotic genomes

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7 January 2021

Evolutionary rate of a gene affected by chromosomal position.

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7 January 2021

Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

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7 January 2021

Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

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7 January 2021

Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes

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7 January 2021

Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells.

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7 January 2021

Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome

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7 January 2021

A global analysis of Caenorhabditis elegans operons

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7 January 2021

Teamed up for transcription

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7 January 2021

An abundance of X-linked genes expressed in spermatogonia

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7 January 2021

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

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7 January 2021

Evidence for large domains of similarly expressed genes in the Drosophila genome

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7 January 2021

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

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7 January 2021

Regulation of adjacent yeast genes

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7 January 2021

Long-range control of expression in yeast.

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7 January 2021

Clustering of housekeeping genes provides a unified model of gene order in the human genome

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7 January 2021

Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution

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7 January 2021

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.

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7 January 2021

Prevalence of small inversions in yeast gene order evolution

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7 January 2021

Fourfold faster rate of genome rearrangement in nematodes than in Drosophila

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7 January 2021

Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: implications for chromosomal evolution and the cloning of disease genes

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7 January 2021

The paleontology of intergene retrotransposons of maize.

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7 January 2021

Evidence for DNA Loss as a Determinant of Genome Size

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7 January 2021

Genomic gigantism: DNA loss is slow in mountain grasshoppers

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7 January 2021

The highly reduced genome of an enslaved algal nucleus

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7 January 2021

The miniaturized nuclear genome of eukaryotic endosymbiont contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns

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7 January 2021

Jam packed genomes--a preliminary, comparative analysis of nucleomorphs

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7 January 2021

Sequence and analysis of chromosome I of the amitochondriate intracellular parasite Encephalitozoon cuniculi (Microspora)

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7 January 2021

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

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7 January 2021

Proposal concerning mechanism of evolution of the genome of Escherichia coli

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7 January 2021

Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module.

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7 January 2021

Reductive evolution of resident genomes.

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7 January 2021

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

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7 January 2021

Lateral gene transfer and the nature of bacterial innovation

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7 January 2021

Lineage-specific gene expansions in bacterial and archaeal genomes

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7 January 2021

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

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7 January 2021

Deletional bias and the evolution of bacterial genomes

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7 January 2021

Microbial minimalism: genome reduction in bacterial pathogens

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7 January 2021

The minimal cell genome: "on being the right size"

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7 January 2021

Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes

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7 January 2021

Degenerative minimalism in the genome of a psyllid endosymbiont

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7 January 2021

The genome sequence of Rickettsia prowazekii and the origin of mitochondria

1 reference

7 January 2021

How many genes can make a cell: the minimal-gene-set concept

1 reference

7 January 2021

Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies

1 reference

7 January 2021

Sequencing. Chimps and fungi make genome.

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7 January 2021

Vertebrate genome sequencing: building a backbone for comparative genomics

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7 January 2021

Evolution of the differential regulation of duplicate genes after polyploidization

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7 January 2021

Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate

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7 January 2021

Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences

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7 January 2021

Rapid divergence in expression between duplicate genes inferred from microarray data

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7 January 2021

The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes

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7 January 2021

Evolutionary rate in the protein interaction network

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7 January 2021

Protein dispensability and rate of evolution

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7 January 2021

Biochemical evolution

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7 January 2021

The evolution of the type I interferon gene family in mammals

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7 January 2021

Large-scale search for genes on which positive selection may operate.

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7 January 2021

Patterns of divergence during evolution of alpha 1-proteinase inhibitors in mammals

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7 January 2021

Coordinated amino acid changes in the evolution of mammalian defensins

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7 January 2021

Conserved evolution of the Rh50 gene compared to its homologous Rh blood group gene.

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7 January 2021

Rapid evolution of male reproductive genes in the descent of man.

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7 January 2021

Molecular phylogeny of Fv1

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7 January 2021

Natural selection promotes divergence of transferrin among salmonid species.

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7 January 2021

Rapid Evolution of the Ribonuclease A Superfamily: Adaptive Expansion of Independent Gene Clusters in Rats and Mice

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7 January 2021

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

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7 January 2021

Natural selection on the erythrocyte surface

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7 January 2021

Positive selection in the evolution of mammalian interleukin-2 genes

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7 January 2021

Natural selection on Plasmodium surface proteins

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7 January 2021

Long term trends in the evolution of H(3) HA1 human influenza type A

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7 January 2021

Recombination of hepatitis D virus RNA sequences and its implications

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7 January 2021

Rapid evolution of fertilization selectivity and lysin cDNA sequences in teguline gastropods

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7 January 2021

Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive darwinian selection of sperm lysin

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7 January 2021

Evolution of the Sry genes.

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7 January 2021

Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence?

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7 January 2021

Identification of regions in which positive selection may operate in S-RNase of Rosaceae: implication for S-allele-specific recognition sites in S-RNase

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7 January 2021

Reduced nucleotide variability at an androgen-binding protein locus (Abpa) in house mice: evidence for positive natural selection

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7 January 2021

Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection?

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7 January 2021

Positive selection and propeptide repeats promote rapid interspecific divergence of a gastropod sperm protein

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7 January 2021

Evidence for adaptive evolution of the G6pd gene in the Drosophila melanogaster and Drosophila simulans lineages

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7 January 2021

Accelerated evolution in the protein-coding regions is universal in crotalinae snake venom gland phospholipase A2 isozyme genes

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7 January 2021

The molecular evolution of vertebrate growth hormones: a pattern of near-stasis interrupted by sustained bursts of rapid change.

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7 January 2021

Episodic evolution of growth hormone in primates and emergence of the species specificity of human growth hormone receptor.

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7 January 2021

Rapid evolution of a homeodomain: evidence for positive selection.

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7 January 2021

Molecular evolution of cytochrome c oxidase subunit IV: evidence for positive selection in simian primates

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7 January 2021

Antarctic fish hemoglobins: evidence for adaptive evolution at subzero temperature.

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7 January 2021

A rapidly evolving homeobox at the site of a hybrid sterility gene

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7 January 2021

Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus

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7 January 2021

Molecular evolution of the COX7A gene family in primates

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7 January 2021

Adaptive evolution of the tumour suppressor BRCA1 in humans and chimpanzees. Australian Breast Cancer Family Study

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7 January 2021

Adaptive evolution of a candidate gene for aging in Drosophila

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7 January 2021

Evidence of positive selection acting at the human dopamine receptor D4 gene locus

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7 January 2021

Sex differences in mutation rate in higher primates estimated from AMG intron sequences.

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7 January 2021

Male-driven evolution of DNA sequences

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7 January 2021

Weak male-driven molecular evolution in rodents

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7 January 2021

Estimating the intensity of male-driven evolution in rodents by using X-linked and Y-linked Ube 1 genes and pseudogenes.

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7 January 2021

Male-driven evolution among Eoaves? A test of the replicative division hypothesis in a heterogametic female (ZW) system

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7 January 2021

Male-biased mutation rates revealed from Z and W chromosome-linked ATP synthase alpha-subunit (ATP5A1) sequences in birds.

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7 January 2021

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

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7 January 2021

Identifiers

DOI

10.1038/NG1088

1 reference

PubMed ID

12610535

Dimensions Publication ID

6 August 2017

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1 reference

PubMed ID

12610535