Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes (Q35080668)

6 August 2017

title

Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes (English)

1 reference

6 August 2017

1 reference

Wen-Hsiung Li

4

0 references

author name string

Yeong-Shin Lin

series ordinal

1

1 reference

6 August 2017

Jake K Byrnes

series ordinal

2

1 reference

6 August 2017

Jenn-Kang Hwang

series ordinal

3

1 reference

6 August 2017

language of work or name

English

0 references

publication date

13 September 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

number of pages

5

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

6 August 2017

volume

103

1 reference

6 August 2017

issue

39

1 reference

6 August 2017

page(s)

14412-14416

1 reference

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

The effect of gene conversion on the divergence between duplicated genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Codon usage between genomes is constrained by genome-wide mutational processes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Sequencing and comparison of yeast species to identify genes and regulatory elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

MIPS: a database for genomes and protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Gene expression and molecular evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Meiotic recombination hot spots and cold spots

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

PAML: a program package for phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Evolution of codon usage bias in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Recombination between repeated genes in microorganisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Codon usage patterns distort phylogenies from or of DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: compositional constraints and translational selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

The partition matrix: exploring variable phylogenetic signals along nucleotide sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Detecting and characterizing gene conversions between multigene family members.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Adjusting for selection on synonymous sites in estimates of evolutionary distance

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Highly expressed genes in yeast evolve slowly.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Statistical tests for detecting gene conversion.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1599977

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

27 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606348103

Selection conflicts, gene expression, and codon usage trends in yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16971485

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Very low gene duplication rate in the yeast genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16971485

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0606348103

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference