MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines (Q35083919)

6 August 2017

MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines (English)

1 reference

6 August 2017

0 references

Taejoon Kwon

1

0 references

Choi Hyungwon

object named as

Hyungwon Choi

series ordinal

2

0 references

Alexey I. Nesvizhskii

object named as

Alexey I Nesvizhskii

series ordinal

4

0 references

Christine Vogel

series ordinal

3

object named as

Christine Vogel

1 reference

6 August 2017

29 April 2011

1 reference

Journal of Proteome Research

6 August 2017

1 reference

6 August 2017

10

1 reference

6 August 2017

7

1 reference

6 August 2017

2949-2958

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

6 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Integrating shotgun proteomics and mRNA expression data to improve protein identification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Significance analysis of spectral count data in label-free shotgun proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Enhancing peptide identification confidence by combining search methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Open mass spectrometry search algorithm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

TANDEM: matching proteins with tandem mass spectra

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Probability-based protein identification by searching sequence databases using mass spectrometry data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128686

8 December 2018

Identifiers

DOI

10.1021/PR2002116

1 reference

6 August 2017

1 reference

6 August 2017

1 reference

PubMed ID

21488652