Combinatorial binding of transcription factors in the pluripotency control regions of the genome (Q35085262)

6 August 2017

title

Combinatorial binding of transcription factors in the pluripotency control regions of the genome (English)

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6 August 2017

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William G Fairbrother

object named as

William G Fairbrother

7

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author name string

Luciana Ferraris

1

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6 August 2017

Allan P Stewart

2

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6 August 2017

Jinsuk Kang

3

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6 August 2017

Alec M DeSimone

4

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6 August 2017

Matthew Gemberling

5

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6 August 2017

Dean Tantin

6

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6 August 2017

publication date

28 April 2011

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6 August 2017

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6 August 2017

volume

21

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6 August 2017

issue

7

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6 August 2017

page(s)

1055-1064

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Tethered-hopping model for protein-DNA binding and unbinding based on Sox2-Oct1-Hoxb1 ternary complex simulations

6 August 2017

cites work

1 reference

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8 July 2018

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FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis

8 July 2018

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Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence

8 July 2018

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Diversity and complexity in DNA recognition by transcription factors

8 July 2018

1 reference

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A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress

8 July 2018

1 reference

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Different transcription factors regulate nestin gene expression during P19 cell neural differentiation and central nervous system development

8 July 2018

1 reference

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FoxO transcription factors in the maintenance of cellular homeostasis during aging

8 July 2018

1 reference

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Identification of DPPA4 and other genes as putative Sox2:Oct-3/4 target genes using a combination of in silico analysis and transcription-based assays.

8 July 2018

1 reference

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High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes

8 July 2018

1 reference

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Successful co-immunoprecipitation of Oct4 and Nanog using cross-linking

8 July 2018

1 reference

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FoxOs are critical mediators of hematopoietic stem cell resistance to physiologic oxidative stress

8 July 2018

1 reference

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Sox2 and Pou2f1 interact to control lens and olfactory placode development

8 July 2018

1 reference

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Differentiation of mouse embryonic stem cells after RNA interference-mediated silencing of OCT4 and Nanog

8 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

8 July 2018

1 reference

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Core transcriptional regulatory circuitry in human embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase

8 July 2018

1 reference

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Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Development of human protein reference database as an initial platform for approaching systems biology in humans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Suppression of ovarian follicle activation in mice by the transcription factor Foxo3a

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

The embryonic stem cell transcription factors Oct-4 and FoxD3 interact to regulate endodermal-specific promoter expression.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

BRCA1 regulates GADD45 through its interactions with the OCT-1 and CAAT motifs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

The virtuoso of versatility: POU proteins that flex to fit

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

The B cell coactivator Bob1 shows DNA sequence-dependent complex formation with Oct-1/Oct-2 factors, leading to differential promoter activation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

In vitro binding of cell-specific and ubiquitous nuclear proteins to the octamer motif of the SV40 enhancer and related motifs present in other promoters and enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

A novel octamer binding transcription factor is differentially expressed in mouse embryonic cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Targeted mutation of the DNA methyltransferase gene results in embryonic lethality

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Transposable elements have rewired the core regulatory network of human embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129248

Embryonic stem cells express neuronal properties in vitro

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21527551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.115824.110

1 reference

6 August 2017

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6 August 2017

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