Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (Q35107920)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21666266%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

title

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (English)

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4 February 2020

3

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4 February 2020

4

Paul T Spellman

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4 February 2020

author name string

Adam B Olshen

1

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4 February 2020

Henrik Bengtsson

2

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4 February 2020

Richard A Olshen

5

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4 February 2020

Venkatraman E Seshan

6

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4 February 2020

language of work or name

English

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publication date

11 June 2011

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4 February 2020

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4 February 2020

volume

27

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4 February 2020

page(s)

2038-2046

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4 February 2020

issue

15

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Bayesian Hidden Markov Modeling of Array CGH Data

4 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays

9 July 2018

1 reference

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Allele-specific copy number analysis of tumors

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Copy neutral loss of heterozygosity: a novel chromosomal lesion in myeloid malignancies

9 July 2018

1 reference

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Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

9 July 2018

1 reference

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PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data

9 July 2018

1 reference

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Integrated study of copy number states and genotype calls using high-density SNP arrays

9 July 2018

1 reference

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A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

9 July 2018

1 reference

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Prevalence of copy-number neutral LOH in glioblastomas revealed by genomewide analysis of laser-microdissected tissues

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Major copy proportion analysis of tumor samples using SNP arrays

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Stochastic segmentation models for array-based comparative genomic hybridization data analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Spatial smoothing and hot spot detection for CGH data using the fused lasso

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

A faster circular binary segmentation algorithm for the analysis of array CGH data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Allele-specific amplification in cancer revealed by SNP array analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

A comparison study: applying segmentation to array CGH data for downstream analyses

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

Denoising array-based comparative genomic hybridization data using wavelets

9 July 2018

1 reference

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A statistical approach for array CGH data analysis

9 July 2018

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Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay

9 July 2018

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Circular binary segmentation for the analysis of array-based DNA copy number data

9 July 2018

1 reference

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An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays

9 July 2018

1 reference

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Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation

9 July 2018

1 reference

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Mechanisms leading to uniparental disomy and their clinical consequences

9 July 2018

1 reference

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High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

9 July 2018

1 reference

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Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors

9 July 2018

1 reference

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Allele-specific Hras mutations and genetic alterations at tumor susceptibility loci in skin carcinomas from interspecific hybrid mice.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137217

10.1093/BIOINFORMATICS/BTR329

27 September 2018

Identifiers

DOI

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journals/bioinformatics/OlshenBNSOS11

4 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21666266%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

1 reference