WGSQuikr: fast whole-genome shotgun metagenomic classification (Q35120230)

6 August 2017

WGSQuikr: fast whole-genome shotgun metagenomic classification (English)

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6 August 2017

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whole genome sequencing

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David Koslicki

1

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6 August 2017

Simon Foucart

series ordinal

2

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6 August 2017

Gail Rosen

series ordinal

3

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6 August 2017

language of work or name

English

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publication date

13 March 2014

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6 August 2017

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6 August 2017

9

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6 August 2017

3

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6 August 2017

e91784

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Creative Commons Attribution 4.0 International

6 August 2017

start time

13 March 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Pearls and pitfalls of genomics-based microbiome analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

MetaID: a novel method for identification and quantification of metagenomic samples

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Genometa--a fast and accurate classifier for short metagenomic shotgun reads

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

The PhyloPythiaS web server for taxonomic assignment of metagenome sequences

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Evaluation of 16S rDNA-based community profiling for human microbiome research

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Metagenomic microbial community profiling using unique clade-specific marker genes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Rapid identification of high-confidence taxonomic assignments for metagenomic data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Grinder: a versatile amplicon and shotgun sequence simulator

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

PhymmBL expanded: confidence scores, custom databases, parallelization and more

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Metagenome fragment classification using N-mer frequency profiles

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Database resources of the National Center for Biotechnology Information

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

MetaSim: a sequencing simulator for genomics and metagenomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3953531

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

9 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091784

10.1371/JOURNAL.PONE.0091784

21 January 2018

Identifiers

DOI

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6 August 2017

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6 August 2017

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