Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF. (Q35146238)

6 August 2017

Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF. (English)

1 reference

6 August 2017

0 references

1 reference

2

1 reference

PubMed ID

12799468

6 August 2017

Zaida Luthey-Schulten

object named as

Zaida Luthey-Schulten

series ordinal

3

0 references

author name string

Rommie Amaro

series ordinal

1

1 reference

PubMed ID

12799468

6 August 2017

language of work or name

English

0 references

publication date

10 June 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

1 reference

6 August 2017

100

1 reference

6 August 2017

13

1 reference

6 August 2017

7599-7604

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

6 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

The open pore conformation of potassium channels

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Energetics of glycerol conduction through aquaglyceroporin GlpF.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Control of the selectivity of the aquaporin water channel family by global orientational tuning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Structural evidence for ammonia tunneling across the (beta alpha)(8) barrel of the imidazole glycerol phosphate synthase bienzyme complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Crystal structure of imidazole glycerol phosphate synthase: a tunnel through a (beta/alpha)8 barrel joins two active sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

On the structure of hisH: protein structure prediction in the context of structural and functional genomics.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Free energy reconstruction from nonequilibrium single-molecule pulling experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Imidazole glycerol phosphate synthase from Thermotoga maritima. Quaternary structure, steady-state kinetics, and reaction mechanism of the bienzyme complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Subunit interactions and glutamine utilization by Escherichia coli imidazole glycerol phosphate synthase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Three-dimensional structure of Escherichia coli asparagine synthetase B: a short journey from substrate to product

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

The amidotransferase family of enzymes: molecular machines for the production and delivery of ammonia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Conformation gating as a mechanism for enzyme specificity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

A stringent test for the nucleotide switch mechanism of carbamoyl phosphate synthetase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Free energy profiles for H+ conduction along hydrogen-bonded chains of water molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Enzymes utilizing glutamine as an amide donor.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Coupled formation of an amidotransferase interdomain ammonia channel and a phosphoribosyltransferase active site

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Structure of carbamoyl phosphate synthetase: a journey of 96 A from substrate to product

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Exchange of K+ or Cs+ for Na+ induces local and long-range changes in the three-dimensional structure of the tryptophan synthase alpha2beta2 complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

OmpA: a pore or not a pore? Simulation and modeling studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Crystal structure and mechanism of a calcium-gated potassium channel

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

The molecular basis of substrate channeling

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164632

Nonequilibrium Equality for Free Energy Differences

27 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1331150100

Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1331150100

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1331150100

Sterically stabilized liposomes of DPPC/DPPE-PEG:2000. A spin label ESR and spectrophotometric study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1331150100

Hydrophilicity of cavities in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12799468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dual role for the glutamine phosphoribosylpyrophosphate amidotransferase ammonia channel. Interdomain signaling and intermediate channeling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12799468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An engineered blockage within the ammonia tunnel of carbamoyl phosphate synthetase prevents the use of glutamine as a substrate but not ammonia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12799468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1331150100

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference

PubMed ID

12799468