Targeted cytosine methylation for in vivo detection of protein-DNA interactions. (Q35146709)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12808133%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

title

Targeted cytosine methylation for in vivo detection of protein-DNA interactions (English)

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4 November 2019

4

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4 November 2019

author name string

Christopher D Carvin

1

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4 November 2019

Archana Dhasarathy

2

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4 November 2019

Laurie B Friesenhahn

3

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4 November 2019

Michael P Kladde

5

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4 November 2019

language of work or name

English

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publication date

13 June 2003

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Proceedings of the National Academy of Sciences of the United States of America

4 November 2019

published in

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4 November 2019

volume

100

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4 November 2019

issue

13

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4 November 2019

page(s)

7743-7748

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A methyltransferase targeting assay reveals silencer-telomere interactions in budding yeast

4 November 2019

cites work

1 reference

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Regulation of chromatin remodeling by inositol polyphosphates

13 July 2018

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SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin

13 July 2018

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Characterisation of site-biased DNA methyltransferases: specificity, affinity and subsite relationships

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

DNA methylation patterns and epigenetic memory

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Chromatin structure mapping in Saccharomyces cerevisiae in vivo with DNase I.

13 July 2018

1 reference

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Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription.

13 July 2018

1 reference

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Transcriptional regulation of the yeast PHO8 promoter in comparison to the coregulated PHO5 promoter.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

In vivo methods to analyze chromatin structure

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Roles of phosphorylation sites in regulating activity of the transcription factor Pho4.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Studying the recruitment of Sp1 to the beta-globin promoter with an in vivo method: protein position identification with nuclease tail (PIN*POINT)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Histone octamer function in vivo: mutations in the dimer-tetramer interfaces disrupt both gene activation and repression

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Effects of Sin- versions of histone H4 on yeast chromatin structure and function

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Regulation of phosphatase synthesis in Saccharomyces cerevisiae--a review

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Direct study of DNA-protein interactions in repressed and active chromatin in living cells.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Structure and distribution of specific cis-elements for transcriptional regulation of PHO84 in Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Positioned nucleosomes inhibit Dam methylation in vivo

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

High sensitivity mapping of methylated cytosines

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Depletion of histone H4 and nucleosomes activates the PHO5 gene in Saccharomyces cerevisiae.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Isolation, physical characterization and expression analysis of the Saccharomyces cerevisiae positive regulatory gene PHO4

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Nucleosome loss activates yeast downstream promoters in vivo

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Base sequence discrimination by zinc-finger DNA-binding domains.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

In vivo footprinting of rat TAT gene: Dynamic interplay between the glucocorticoid receptor and a liver-specific factor

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Activation of the weakly regulated PHO8 promoter in S. cerevisiae: chromatin transition and binding sites for the positive regulatory protein PHO4

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

A hit-and-run system for targeted genetic manipulations in yeast

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=164658

Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction.

13 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1332672100

An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1332672100

Identification of Cohesin Association Sites at Centromeres and along Chromosome Arms

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1332672100

Active genes in budding yeast display enhanced in vivo accessibility to foreign DNA methylases: a novel in vivo probe for chromatin structure of yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1332672100

Cytosine methylation targetted to pre-determined sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1332672100

21 January 2018

Identifiers

DOI

10.1073/PNAS.1332672100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12808133%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

0 references

1 reference

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4 November 2019

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