Comparative genome analysis of Prevotella intermedia strain isolated from infected root canal reveals features related to pathogenicity and adaptation. (Q35147285)

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English	Comparative genome analysis of Prevotella intermedia strain isolated from infected root canal reveals features related to pathogenicity and adaptation.	scientific article

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2 March 2020

Comparative genome analysis of Prevotella intermedia strain isolated from infected root canal reveals features related to pathogenicity and adaptation (English)

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2 March 2020

Prevotella intermedia

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Prevotella intermedia

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9

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2 March 2020

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Yunfeng Ruan

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2 March 2020

Lu Shen

2

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2 March 2020

Yan Zou

3

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2 March 2020

Zhengnan Qi

4

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2 March 2020

Jun Yin

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2 March 2020

Jie Jiang

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2 March 2020

Liang Guo

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2 March 2020

Lin He

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2 March 2020

Zisheng Tang

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2 March 2020

Shengying Qin

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25 February 2015

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2 March 2020

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2 March 2020

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2 March 2020

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2 March 2020

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Creative Commons Attribution 4.0 International

25 February 2015

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April 2022 Public Data File from Crossref

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describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease

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Bacterial diversity in oral samples of children in niger with acute noma, acute necrotizing gingivitis, and healthy controls

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The pneumococcal serine-rich repeat protein is an intra-species bacterial adhesin that promotes bacterial aggregation in vivo and in biofilms

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Characterization of hemin-binding protein 35 (HBP35) in Porphyromonas gingivalis: its cellular distribution, thioredoxin activity and role in heme utilization

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13 July 2018

AdpC is a Prevotella intermedia 17 leucine-rich repeat internalin-like protein

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13 July 2018

Role of the cysteine protease interpain A of Prevotella intermedia in breakdown and release of haem from haemoglobin

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13 July 2018

Interpain A, a cysteine proteinase from Prevotella intermedia, inhibits complement by degrading complement factor C3.

1 reference

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13 July 2018

The vaginal microflora in relation to gingivitis

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13 July 2018

Clustal W and Clustal X version 2.0

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13 July 2018

Prevotella intermedia lipopolysaccharide stimulates release of tumor necrosis factor-alpha through mitogen-activated protein kinase signaling pathways in monocyte-derived macrophages

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13 July 2018

KAAS: an automatic genome annotation and pathway reconstruction server

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13 July 2018

Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces.

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13 July 2018

Identification and characterization of a cell surface protein of Prevotella intermedia 17 with broad-spectrum binding activity for extracellular matrix proteins

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Biochemical properties of recombinant prolyl dipeptidases DPP-IV and DPP8

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The microbial pan-genome

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Fibroblast activation protein-alpha and dipeptidyl peptidase IV (CD26): cell-surface proteases that activate cell signaling and are potential targets for cancer therapy

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13 July 2018

Prevotella intermedia lipopolysaccharide stimulates release of nitric oxide by inducing expression of inducible nitric oxide synthase

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13 July 2018

CD26/dipeptidyl peptidase IV and its role in cancer

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13 July 2018

Cleavage of CD14 and LBP by a protease from Prevotella intermedia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

The crystal structure of dipeptidyl peptidase IV (CD26) reveals its functional regulation and enzymatic mechanism

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13 July 2018

Regulation of interleukin-6 expression in human dental pulp cell cultures stimulated with Prevotella intermedia lipopolysaccharide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

Characterization of a novel outer membrane hemin-binding protein of Porphyromonas gingivalis

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13 July 2018

Intraspecies variation in bacterial genomes: the need for a species genome concept

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13 July 2018

KEGG: kyoto encyclopedia of genes and genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

Virulence factors of Porphyromonas gingivalis.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

Microbiological understandings and mysteries of noma (cancrum oris).

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13 July 2018

Dipeptidyl peptidase IV: a cell surface peptidase involved in regulating T cell growth (review).

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

The importance of fimbriae in the virulence and ecology of some oral bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

Lipopolysaccharides (LPS) of oral black-pigmented bacteria induce tumor necrosis factor production by LPS-refractory C3H/HeJ macrophages in a way different from that of Salmonella LPS.

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A genomic perspective on protein families

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13 July 2018

A novel component different from endotoxin extracted from Prevotella intermedia ATCC 25611 activates lymphoid cells from C3H/HeJ mice and gingival fibroblasts from humans

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

The importance of immunoglobulin-breakdown supporting the growth of bacteria in oral abscesses

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13 July 2018

Cloning and sequencing of a Bordetella pertussis serum resistance locus.

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13 July 2018

Vancomycin as a selective agent for isolation of Bacteroides species

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13 July 2018

Basic local alignment search tool

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13 July 2018

Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

The role of inflammatory mediators in the pathogenesis of periodontal disease

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

Lipopolysaccharides of Bacteroides intermedius (Prevotella intermedia) and Bacteroides (Porphyromonas) gingivalis induce interleukin-8 gene expression in human gingival fibroblast cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

13 July 2018

A method for the isolation of Bacteroides melaninogenicus from the human mouth

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13 July 2018

The genus Prevotella in cystic fibrosis airways

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Microarrays complement culture methods for identification of bacteria in endodontic infections.

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27 September 2018

Microbiological analysis of infected root canals from symptomatic and asymptomatic teeth with periapical periodontitis and the antimicrobial susceptibility of some isolated anaerobic bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Purification and partial characterization of a dipeptidyl peptidase from Prevotella intermedia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Isolation and characterization of hemolysin activated by reductant from Prevotella intermedia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Hemolytic activity of Prevotella intermedia and Prevotella nigrescens strains: influence of abiotic factors in solid and liquid assays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Construction and analysis of hemin binding protein mutants in the oral pathogen Treponema denticola.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Hemolytic and hemagglutinating activities of Prevotella intermedia and Prevotella nigrescens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

The binding and utilization of hemoglobin by Prevotella intermedia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Polymerase chain reaction detection of 8 putative periodontal pathogens in subgingival plaque of gingivitis and advanced periodontitis lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

A study of the anaerobic bacterial flora of the female genital tract in health and disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Interleukin-8 gene expression by human dental pulp fibroblast in cultures stimulated with Prevotella intermedia lipopolysaccharide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

27 September 2018

Intra-species diversity and epidemiology varies among coagulase-negative Staphylococcus species causing bovine intramammary infections

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1272-3

21 January 2018

Relative contribution of Prevotella intermedia and Pseudomonas aeruginosa to lung pathology in airways of patients with cystic fibrosis

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1272-3

21 January 2018

Characterization of bacterial flora in persistent apical periodontitis lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349605

8 December 2018

Porphyromonas gingivalis, Porphyromonas endodontalis, Prevotella intermedia and Prevotella nigrescens in endodontic lesions detected by culture and by PCR

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence patterns of Porphyromonas gingivalis, Prevotella intermedia/nigrescens, and Actinobacillus actinomyetemcomitans after mechanical therapy of periodontal disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathways for amino acid metabolism by Prevotella intermedia and Prevotella nigrescens

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glucose metabolism by Prevotella intermedia and Prevotella nigrescens

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of human gingival epithelial cells by cell-surface components of black-pigmented bacteria: augmentation of production of interleukin-8, granulocyte colony-stimulating factor and granulocyte-macrophage colony-stimulating factor and expressi

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Degradation of human hemoglobin by Prevotella intermedia

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of protocols for field decontamination before bacterial sampling of root canals for contemporary microbiology techniques

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The haem pigment of the oral anaerobes Prevotella nigrescens and Prevotella intermedia is composed of iron(III) protoporphyrin IX in the monomeric form

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immune response to Fusobacterium nucleatum and Prevotella intermedia in the sputum of patients with acute exacerbation of chronic bronchitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbiological examination of infected dental root canals

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Associations of specific bacteria with some endodontic signs and symptoms

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of immunoglobulin G-degrading proteases of Prevotella intermedia and Prevotella nigrescens

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of host tissue and bacterial dipeptidyl peptidases in human gingival crevicular fluid by analytical isoelectric focusing

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prevotella intermedia fimbriae mediate hemagglutination

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Associations of endodontic symptoms and signs with particular combinations of specific bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Haemoglobin receptor protein is intragenically encoded by the cysteine proteinase-encoding genes and the haemagglutinin-encoding gene of Porphyromonas gingivalis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of hemolytic activity in Prevotella intermedia

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Incidence of Prevotella intermedia and Prevotella nigrescens in periodontal health and disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fibronectin and laminin binding of urogenital and oral prevotella species

1 reference

https://pubmed.ncbi.nlm.nih.gov/25765460

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-015-1272-3

1 reference

Europe PubMed Central

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2 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25765460%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25765460%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

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