FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections. (Q35161360)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections (English)

1 reference

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1 March 2020

1 reference

1

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1 March 2020

author name string

Jonathan L Chang

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Donald H Burke

series ordinal

3

1 reference

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1 March 2020

publication date

3 March 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

Molecular Therapy. Nucleic acids

1 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

4

1 reference

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1 March 2020

page(s)

e230

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization

1 March 2020

cites work

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Dissemination of scientific software with Galaxy ToolShed

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Current progress of aptamer-based molecular imaging

28 July 2018

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28 July 2018

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Quantitative selection and parallel characterization of aptamers

28 July 2018

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28 July 2018

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Potent Inhibition of HIV-1 Reverse Transcriptase and Replication by Nonpseudoknot, "UCAA-motif" RNA Aptamers.

28 July 2018

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Rapid identification of cell-specific, internalizing RNA aptamers with bioinformatics analyses of a cell-based aptamer selection

28 July 2018

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Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers

28 July 2018

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Delivery of chemo-sensitizing siRNAs to HER2+-breast cancer cells using RNA aptamers

28 July 2018

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Phage display screening without repetitious selection rounds

28 July 2018

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28 July 2018

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28 July 2018

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In vitro Selection of DNA Aptamers to Glioblastoma Multiforme.

28 July 2018

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Nucleotide bias observed with a short SELEX RNA aptamer library

28 July 2018

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Acyclic identification of aptamers for human alpha-thrombin using over-represented libraries and deep sequencing

28 July 2018

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Rapid Construction of Empirical RNA Fitness Landscapes

28 July 2018

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By-passing in vitro screening—next generation sequencing technologies applied to antibody display and in silico candidate selection

28 July 2018

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

28 July 2018

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High-resolution mapping of protein sequence-function relationships

28 July 2018

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Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing

28 July 2018

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SEWAL: an open-source platform for next-generation sequence analysis and visualization

28 July 2018

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Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

28 July 2018

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Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX.

28 July 2018

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Rapid interactome profiling by massive sequencing

28 July 2018

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28 July 2018

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

28 July 2018

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Galaxy: a platform for interactive large-scale genome analysis

28 July 2018

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Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase

28 July 2018

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28 July 2018

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28 July 2018

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27 September 2018

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27 September 2018

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27 September 2018

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27 September 2018

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Isolation and optimization of murine IL-10 receptor blocking oligonucleotide aptamers using high-throughput sequencing.

27 September 2018

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Probing the SELEX process with next-generation sequencing

27 September 2018

1 reference

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Evolutionary landscapes for the acquisition of new ligand recognition by RNA aptamers

27 September 2018

1 reference

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AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from its Application

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25734917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/25734917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cutadapt removes adapter sequences from high-throughput sequencing reads

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMTNA.2015.4

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/MTNA.2015.4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

PubMed publication ID

25734917

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25734917%20AND%20SRC:MED&resulttype=core&format=json