Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria (Q35164403)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

title

Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

elongation factor 1-alpha, putative

5 November 2019

main subject

1 reference

GeneDB

eukaryotic release factor 3, putative

6 February 2019

1 reference

6 February 2019

1

1 reference

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5 November 2019

4

Andrew J Roger

1 reference

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5 November 2019

author name string

Christian Blouin

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

Edward Susko

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

language of work or name

English

0 references

publication date

1 July 2003

1 reference

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5 November 2019

published in

Nucleic Acids Research

1 reference

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5 November 2019

volume

31

1 reference

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5 November 2019

issue

14

1 reference

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5 November 2019

page(s)

4227-4237

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

Among-site rate variation and its impact on phylogenetic analyses

5 November 2019

cites work

1 reference

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Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information.

13 July 2018

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A covarion-based method for detecting molecular adaptation: application to the evolution of primate mitochondrial genomes

13 July 2018

1 reference

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Predicting functional divergence in protein evolution by site-specific rate shifts

13 July 2018

1 reference

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Inference of functional regions in proteins by quantification of evolutionary constraints

13 July 2018

1 reference

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Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity.

13 July 2018

1 reference

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Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

13 July 2018

1 reference

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The crystal structure of Sulfolobus solfataricus elongation factor 1alpha in complex with GDP reveals novel features in nucleotide binding and exchange

13 July 2018

1 reference

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Crystal structures of nucleotide exchange intermediates in the eEF1A-eEF1Balpha complex

13 July 2018

1 reference

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Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors

13 July 2018

1 reference

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Class I release factors in ciliates with variant genetic codes

13 July 2018

1 reference

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Endless possibilities: translation termination and stop codon recognition

13 July 2018

1 reference

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Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha

13 July 2018

1 reference

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Release factors and their role as decoding proteins: specificity and fidelity for termination of protein synthesis

13 July 2018

1 reference

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Rapid fold and structure determination of the archaeal translation elongation factor 1beta from Methanobacterium thermoautotrophicum

13 July 2018

1 reference

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The Giardia genome project database.

13 July 2018

1 reference

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Mtt1 is a Upf1-like helicase that interacts with the translation termination factors and whose overexpression can modulate termination efficiency

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Translation termination in eukaryotes: polypeptide release factor eRF1 is composed of functionally and structurally distinct domains

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The solution structure of the guanine nucleotide exchange domain of human elongation factor 1beta reveals a striking resemblance to that of EF-Ts from Escherichia coli

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3'-Poly(A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The Dictyostelium developmental cDNA project: generation and analysis of expressed sequence tags from the first-finger stage of development.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

C-terminal domains of human translation termination factors eRF1 and eRF3 mediate their in vivo interaction

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The product of the mammalian orthologue of the Saccharomyces cerevisiae HBS1 gene is phylogenetically related to eukaryotic release factor 3 (eRF3) but does not carry eRF3-like activity

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

13 July 2018

EF-Tu, a GTPase odyssey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The stretch of C-terminal acidic amino acids of translational release factor eRF1 is a primary binding site for eRF3 of fission yeast

13 July 2018

1 reference

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The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs

13 July 2018

1 reference

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Modeling the covarion hypothesis of nucleotide substitution.

13 July 2018

1 reference

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Visible volume: a robust measure for protein structure characterization

13 July 2018

1 reference

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PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Crystal structure of the EF-Tu.EF-Ts complex from Thermus thermophilus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

VMD: visual molecular dynamics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: tRNA-protein mimicry hypothesis

13 July 2018

1 reference

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Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution

13 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The translation machinery and 70 kd heat shock protein cooperate in protein synthesis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Testing for differences in rates-across-sites distributions in phylogenetic subtrees.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Identification of essential amino acid changes in paired domain evolution using a novel combination of evolutionary analysis and in vitro and in vivo studies.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The crystal structure of eEF1A refines the functional predictions of an evolutionary analysis of rate changes among elongation factors

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Mathematical elegance with biochemical realism: the covarion model of molecular evolution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Maximum-likelihood phylogenetic analysis under a covarion-like model.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Maximum-likelihood approach for gene family evolution under functional divergence.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

The root of the tree of life in the light of the covarion model

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

C-terminal interaction of translational release factors eRF1 and eRF3 of fission yeast: G-domain uncoupled binding and the role of conserved amino acids

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

How protein reads the stop codon and terminates translation

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165955

Testing a covariotide model of DNA substitution

27 September 2018

1 reference

12 December 2020

Deletion analysis of the SUP35 gene of the yeast Saccharomyces cerevisiae reveals two non-overlapping functional regions in the encoded protein

1 reference

12 December 2020

The C-terminus of eRF1 defines a functionally important domain for translation termination in Saccharomyces cerevisiae

1 reference

12 December 2020

Eukaryotic translation elongation factor 1 alpha: structure, expression, functions, and possible role in aminoacyl-tRNA channeling

1 reference

12 December 2020

Molecular mimicry between protein and tRNA

1 reference

12 December 2020

Evolution of the eukaryotic translation termination system: origins of release factors

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG440

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

PubMed publication ID

12853641

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12853641%20AND%20SRC:MED&resulttype=core&format=json