Finding sequences for over 270 orphan enzymes (Q35168343)

6 August 2017

Finding sequences for over 270 orphan enzymes (English)

1 reference

6 August 2017

Alexander G Shearer

1

1 reference

6 August 2017

Tomer Altman

series ordinal

2

1 reference

6 August 2017

Christine D Rhee

series ordinal

3

1 reference

6 August 2017

language of work or name

English

0 references

publication date

14 May 2014

1 reference

6 August 2017

1 reference

6 August 2017

9

1 reference

6 August 2017

e97250

1 reference

6 August 2017

5

1 reference

Creative Commons Attribution 4.0 International

6 August 2017

start time

14 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC4020792

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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1 reference

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GoSynthetic database tool to analyse natural and engineered molecular processes

28 July 2018

1 reference

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Simple topological properties predict functional misannotations in a metabolic network

28 July 2018

1 reference

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CINPER: an interactive web system for pathway prediction for prokaryotes

28 July 2018

1 reference

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BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA.

28 July 2018

1 reference

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Update on activities at the Universal Protein Resource (UniProt) in 2013

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

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28 July 2018

1 reference

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Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

28 July 2018

1 reference

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Discovering novel subsystems using comparative genomics

28 July 2018

1 reference

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CDD: a Conserved Domain Database for the functional annotation of proteins

28 July 2018

1 reference

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A guide to UniProt for protein scientists

28 July 2018

1 reference

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Use and misuse of the gene ontology annotations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Identification in the yeast Pichia stipitis of the first L-rhamnose-1-dehydrogenase gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

A survey of orphan enzyme activities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

ORENZA: a web resource for studying ORphan ENZyme activities

28 July 2018

1 reference

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BioWarehouse: a bioinformatics database warehouse toolkit

28 July 2018

1 reference

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Call for an enzyme genomics initiative

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

The ENZYME database in 2000

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Enzyme Nomenclature. Recommendations 1992. Supplement 4: corrections and additions (1997).

28 July 2018

1 reference

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Some properties and a suggested reclassification of mevaldate reductase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Bile acid sulfotransferase I from rat liver sulfates bile acids and 3-hydroxy steroids: purification, N-terminal amino acid sequence, and kinetic properties.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Rapid identification of sequences for orphan enzymes to power accurate protein annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Predicting genes for orphan metabolic activities using phylogenetic profiles

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

The Gene Ontology (GO) database and informatics resource

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

Reduction of mevaldic acid to mevalonic acid by a partially purified enzyme from liver.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4020792

27 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24826896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distribution of orphan metabolic activities

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24826896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0097250

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference