edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens (Q35173843)

6 August 2017

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens (English)

1 reference

6 August 2017

0 references

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Linden J Gearing

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Ross A. Dickins

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Marnie Blewitt

10

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4 June 2020

Matthew E Ritchie

11

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4 June 2020

author name string

Zhiyin Dai

1

1 reference

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4 June 2020

Darcy L Moore

4

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4 June 2020

Shian Su

5

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4 June 2020

Sam Wormald

6

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4 June 2020

Stephen Wilcox

7

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4 June 2020

Liam O'Connor

8

1 reference

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4 June 2020

publication date

24 April 2014

1 reference

6 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

3

1 reference

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4 June 2020

page(s)

95

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Creative Commons Attribution 4.0 International

4 June 2020

copyright license

start time

21 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Robustly detecting differential expression in RNA sequencing data using observation weights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Genome-scale CRISPR-Cas9 knockout screening in human cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Genetic screens in human cells using the CRISPR-Cas9 system

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Cas9 as a versatile tool for engineering biology

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

ATM and MET kinases are synthetic lethal with nongenotoxic activation of p53.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Camera: a competitive gene set test accounting for inter-gene correlation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

ROAST: rotation gene set tests for complex microarray experiments

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Galaxy: a web-based genome analysis tool for experimentalists

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Rapid creation and quantitative monitoring of high coverage shRNA libraries

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Galaxy: a platform for interactive large-scale genome analysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Bioconductor: open software development for computational biology and bioinformatics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

Dicers at RISC; the mechanism of RNAi

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

BiNGS!SL-seq: a bioinformatics pipeline for the analysis and interpretation of deep sequencing genome-wide synthetic lethal screen.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4023662

10.12688/F1000RESEARCH.3928.2

27 September 2018

Identifiers

DOI

1 reference

PubMed ID

24860646

10.12688/F1000RESEARCH.4204

6 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860646%20AND%20SRC:MED&resulttype=core&format=json