Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes (Q35179220)

7 August 2017

title

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes (English)

1 reference

Vladimir Espinosa Angarica

7 August 2017

0 references

Vladimir Espinosa Angarica

2

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Julio Collado-Vides

Julio Collado-Vides

4

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Ana Tereza R Vasconcelos

Ana Tereza R Vasconcelos

3

1 reference

https://orcid.org/0000-0002-4632-2086

Abel Gonzalez-Perez

1

Abel González Pérez

1 reference

7 August 2017

language of work or name

English

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publication date

6 November 2006

1 reference

7 August 2017

published in

Nucleic Acids Research

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7 August 2017

volume

35

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7 August 2017

issue

Database issue

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7 August 2017

page(s)

D132-6

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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Making connections between novel transcription factors and their DNA motifs.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

EcoCyc: a comprehensive database resource for Escherichia coli

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Discovery of novel transcription factor binding sites by statistical overrepresentation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Discovery of regulatory elements by a computational method for phylogenetic footprinting

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Comparative analysis of FUR regulons in gamma-proteobacteria

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Conservation of the binding site for the arginine repressor in all bacterial lineages

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

A comparative genomics approach to prediction of new members of regulons

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Measuring genome evolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

A powerful non-homology method for the prediction of operons in prokaryotes.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

Comparative Studies of Transcriptional Regulation Mechanisms in a Group of Eight Gamma-proteobacterial Genomes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669740

15 November 2018

Identifiers

DOI

10.1093/NAR/GKL800

1 reference

7 August 2017

DBLP publication ID

journals/nar/PerezAVC07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

7 August 2017

1 reference