Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae (Q35181563)

7 August 2017

title

Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae (English)

1 reference

7 August 2017

Pospiviroidae

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Tamara Giguère

1

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7 August 2017

Charith Raj Adkar-Purushothama

series ordinal

2

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7 August 2017

Jean-Pierre Perreault

series ordinal

3

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7 August 2017

language of work or name

English

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publication date

4 June 2014

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7 August 2017

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7 August 2017

volume

9

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7 August 2017

issue

6

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7 August 2017

page(s)

e98655

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Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

4 June 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Elucidation of the structures of all members of the Avsunviroidae family

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Infectious cDNA clones of four viroids in Coleus blumei and molecular characterization of their progeny

13 July 2018

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Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

13 July 2018

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QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

13 July 2018

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Viroids: self-replicating, mobile, and fast-evolving noncoding regulatory RNAs

13 July 2018

1 reference

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Mapping studies of the Peach latent mosaic viroid reveal novel structural features

13 July 2018

1 reference

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RNAstructure: software for RNA secondary structure prediction and analysis

13 July 2018

1 reference

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ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis

13 July 2018

1 reference

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Viroids and viroid-host interactions.

13 July 2018

1 reference

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Tomato chlorotic dwarf viroid: an evolutionary link in the origin of pospiviroids

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

In vitro-generated 'inverse' chimeric Coleus blumei viroids evolve in vivo into infectious RNA replicons

13 July 2018

1 reference

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Compilation and analysis of viroid and viroid-like RNA sequences

13 July 2018

1 reference

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Chrysanthemum stunt viroid: primary sequence and secondary structure.

13 July 2018

1 reference

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13 July 2018

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Nucleotide sequence and secondary structure of apple scar skin viroid

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Primary and secondary structure of a new viroid 'species' (CbVd 1) present in the Coleus blumei cultivar 'Bienvenue'.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Principles for understanding the accuracy of SHAPE-directed RNA structure modeling

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

The use of a combination of computer-assisted structure prediction and SHAPE probing to elucidate the secondary structures of five viroids.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Coleus blumei viroid 6: a new tentative member of the genus Coleviroid derived from natural genome shuffling

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Identification and characterization of a new coleviroid (CbVd-5).

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Time-resolved RNA SHAPE chemistry

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Characterization of a new citrus viroid species tentatively termed Citrus viroid OS.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4045682

Pear Blister Canker Viroid is a Member of the Apple Scar Skin Subgroup (apscaviroids) and also has Sequence Homology with Viroids from other Subgroups

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0098655

Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch

21 January 2018

1 reference

12 December 2020

Coconut tinangaja viroid: sequence homology with coconut cadang-cadang viroid and other potato spindle tuber viroid related RNAs

1 reference

12 December 2020

Discovering viroids — a personal perspective

1 reference

12 December 2020

Sap-direct RT-PCR for the rapid detection of coleus blumei viroids of the genus Coleviroid from natural host plants

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0098655

Identifiers

DOI

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7 August 2017

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7 August 2017

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