Towards a mitogenomic phylogeny of Lepidoptera (Q35183745)

7 August 2017

Towards a mitogenomic phylogeny of Lepidoptera (English)

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7 August 2017

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Martijn J T N Timmermans

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PubMed ID

24910155

7 August 2017

David C Lees

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PubMed ID

24910155

7 August 2017

Thomas J Simonsen

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7 August 2017

6 June 2014

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Molecular Phylogenetics and Evolution

7 August 2017

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published in

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7 August 2017

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7 August 2017

169-178

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Basic local alignment search tool

7 August 2017

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogenetic relationships among the Nymphalidae (Lepidoptera) inferred from partial sequences of the wingless gene

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

RNA sequence analysis using covariance models

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogeny of the Nymphalidae (Lepidoptera).

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Mitogenome sequences stabilize the phylogenetics of weevils (Curculionoidea) and establish the monophyly of larval ectophagy

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Cretaceous origin and repeated tertiary diversification of the redefined butterflies

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogeny of the mega-diverse Gelechioidea (Lepidoptera): adaptations and determinants of success

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A molecular analysis of the Gelechiidae (Lepidoptera, Gelechioidea) with an interpretative grouping of its taxa

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

MAFFT version 5: improvement in accuracy of multiple sequence alignment

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Multiple alignment of DNA sequences with MAFFT

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Reconstructing intraordinal relationships in Lepidoptera using mitochondrial genome data with the description of two newly sequenced lycaenids, Spindasis takanonis and Protantigius superans (Lepidoptera: Lycaenidae).

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Characterization of the complete mitochondrion genome of diurnal Moth Amata emma (Butler) (Lepidoptera: Erebidae) and its phylogenetic implications

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogeny, historical biogeography, and taxonomic ranking of Parnassiinae (Lepidoptera, Papilionidae) based on morphology and seven genes.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher-level classification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Quality control and preprocessing of metagenomic datasets

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A comparative analysis of complete mitochondrial genomes among Hexapoda.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogenetics and divergence times of Papilioninae (Lepidoptera) with special reference to the enigmatic genera Teinopalpus and Meandrusa

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Butterfly morphology in a molecular age -- does it still matter in butterfly systematics?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A molecular phylogeny for yponomeutoidea (insecta, Lepidoptera, ditrysia) and its implications for classification, biogeography and the evolution of host plant use

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Order Lepidoptera Linnaeus, 1758. In: Zhang, Z.-Q. (Ed.) Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of lepidoptera

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Towards a better understanding of the higher systematics of Nymphalidae (Lepidoptera: Papilionoidea).

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Nymphalid butterflies diversify following near demise at the Cretaceous/Tertiary boundary

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

FeatureExtract--extraction of sequence annotation made easy

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

DAMBE: software package for data analysis in molecular biology and evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

A new molecular phylogeny offers hope for a stable family level classification of the Noctuoidea (Lepidoptera)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Molecular phylogenetics of Erebidae (Lepidoptera, Noctuoidea)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Major lineages of Nolidae (Lepidoptera, Noctuoidea) elucidated by molecular phylogenetics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Increased gene sampling yields robust support for higher-level clades within Bombycoidea (Lepidoptera)

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

Resolving discrepancy between nucleotides and amino acids in deep-level arthropod phylogenomics: differentiating serine codons in 21-amino-acid models

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.05.031

10.1016/J.YMPEV.2014.05.031

7 January 2021

Identifiers

DOI

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7 August 2017

1 reference

PubMed ID

24910155