Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit. (Q35189814)

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1 March 2020

title

Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit (English)

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1 March 2020

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1

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1 March 2020

author name string

Bing Liu

2

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1 March 2020

Peng Xie

3

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1 March 2020

Michael Q Zhang

4

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1 March 2020

Yanda Li

5

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1 March 2020

Zhen Xie

6

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1 March 2020

Xiaowo Wang

7

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1 March 2020

language of work or name

English

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publication date

23 February 2015

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Proceedings of the National Academy of Sciences of the United States of America

1 March 2020

published in

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1 March 2020

volume

112

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1 March 2020

issue

10

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1 March 2020

page(s)

3158-3163

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Competition between target sites of regulators shapes post-transcriptional gene regulation.

1 March 2020

cites work

1 reference

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Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance

13 July 2018

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The multilayered complexity of ceRNA crosstalk and competition

13 July 2018

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MiRNAs confer phenotypic robustness to gene networks by suppressing biological noise.

13 July 2018

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Modelling Competing Endogenous RNA Networks

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Diversifying microRNA sequence and function

13 July 2018

1 reference

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Transcripts for combined synthetic microRNA and gene delivery

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

13 July 2018

1 reference

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MicroRNAs as a selective channel of communication between competing RNAs: a steady-state theory.

13 July 2018

1 reference

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Natural RNA circles function as efficient microRNA sponges

13 July 2018

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Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties

13 July 2018

1 reference

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In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma

13 July 2018

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

13 July 2018

1 reference

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A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

13 July 2018

1 reference

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Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

13 July 2018

1 reference

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Multi-input RNAi-based logic circuit for identification of specific cancer cells

13 July 2018

1 reference

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MicroRNAs can generate thresholds in target gene expression

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells

13 July 2018

1 reference

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Target mRNA abundance dilutes microRNA and siRNA activity

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Recognizing and avoiding siRNA off-target effects for target identification and therapeutic application

13 July 2018

1 reference

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MicroRNAs: target recognition and regulatory functions

13 July 2018

1 reference

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MicroRNA-21 down-regulates the expression of tumor suppressor PDCD4 in human glioblastoma cell T98G.

13 July 2018

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Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Quantitative characteristics of gene regulation by small RNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

A mammalian microRNA expression atlas based on small RNA library sequencing

13 July 2018

1 reference

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RNAhybrid: microRNA target prediction easy, fast and flexible

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364186

Kinetic analysis of the RNAi enzyme complex

13 July 2018

1 reference

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A microRNA in a multiple-turnover RNAi enzyme complex

13 July 2018

1 reference

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Redefining microRNA targets

13 July 2018

1 reference

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27 September 2018

Identifiers

DOI

10.1073/PNAS.1413896112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25713348%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

0 references

1 reference

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1 March 2020

PubMed publication ID

25713348

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25713348%20AND%20SRC:MED&resulttype=core&format=json