Biospecimen reporting for improved study quality (BRISQ) (Q35203154)

7 August 2017

title

Biospecimen reporting for improved study quality (BRISQ) (English)

1 reference

7 August 2017

Pierre Hainaut

8

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Yaffa Rubinstein

13

object named as

Yaffa Rubinstein

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7 August 2017

19

Jim Vaught

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7 August 2017

Helen M Moore

1

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7 August 2017

Andrea B Kelly

2

1 reference

7 August 2017

Scott D Jewell

3

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7 August 2017

Lisa M McShane

4

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7 August 2017

Douglas P Clark

5

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7 August 2017

Renata Greenspan

6

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7 August 2017

Daniel F Hayes

7

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7 August 2017

Paula Kim

9

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7 August 2017

Elizabeth Mansfield

10

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7 August 2017

Olga Potapova

11

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7 August 2017

Peter Riegman

12

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7 August 2017

Edward Seijo

14

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7 August 2017

Stella Somiari

15

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7 August 2017

Peter Watson

16

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7 August 2017

Heinz-Ulrich Weier

17

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7 August 2017

Claire Zhu

18

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7 August 2017

publication date

21 June 2011

1 reference

Journal of Proteome Research

7 August 2017

published in

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7 August 2017

volume

10

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7 August 2017

issue

8

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7 August 2017

page(s)

3429-3438

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Effects of preanalytical variables on the detection of proteins by immunohistochemistry in formalin-fixed, paraffin-embedded tissue

7 August 2017

cites work

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28 July 2018

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Standard preanalytical coding for biospecimens: defining the sample PREanalytical code

28 July 2018

1 reference

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Sources of bias in specimens for research about molecular markers for cancer

28 July 2018

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The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fluid (CSF).

28 July 2018

1 reference

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28 July 2018

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Approaching clinical proteomics: current state and future fields of application in fluid proteomics

28 July 2018

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Informed consent in biobank research: a deliberative approach to the debate

28 July 2018

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Influence of evolution in tumor biobanking on the interpretation of translational research.

28 July 2018

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A portrait of tissue phosphoprotein stability in the clinical tissue procurement process

28 July 2018

1 reference

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High-throughput 1H NMR-based metabolic analysis of human serum and urine for large-scale epidemiological studies: validation study

28 July 2018

1 reference

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Effects of processing delay, formalin fixation, and immunohistochemistry on RNA Recovery From Formalin-fixed Paraffin-embedded Tissue Sections.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effects of blood collection conditions on ovarian cancer serum markers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

An exfoliation and enrichment strategy results in improved transcriptional profiles when compared to matched formalin fixed samples.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Urine profiling by SELDI-TOF/MS: monitoring of the critical steps in sample collection, handling and analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Efficient DNA extraction from 25-year-old paraffin-embedded tissues: study of 365 samples

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Preanalytic influence of sample handling on SELDI-TOF serum protein profiles.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Standardized peptidome profiling of human urine by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Radial distance of extraprostatic extension measured by ocular micrometer is an independent predictor of prostate-specific antigen recurrence: A new proposal for the substaging of pT3a prostate cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

American Society of Clinical Oncology/College of American Pathologists guideline recommendations for human epidermal growth factor receptor 2 testing in breast cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Successful RNA extraction from various human postmortem tissues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Tissue preparation and banking

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Proteomic analysis and comparison of the biopsy and autopsy specimen of human brain temporal lobe

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Technology insight: Application of molecular techniques to formalin-fixed paraffin-embedded tissues from breast cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of fixation to the degradation of nuclear and mitochondrial DNA in different tissues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisation-time of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Different techniques for urinary protein analysis of normal and lung cancer patients

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

HER-2/neu detection in fine-needle aspirates of breast cancer: fluorescence in situ hybridization and immunocytochemical analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Comparison of gene expression profiles in laser-microdissected, nonembedded, and OCT-embedded tumor samples by oligonucleotide microarray analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

A genetic explanation of Slaughter's concept of field cancerization: evidence and clinical implications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of fixatives and tissue processing on the content and integrity of nucleic acids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Development and validation of a method for using breast core needle biopsies for gene expression microarray analyses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Multivariate analysis of RNA levels from postmortem human brains as measured by three different methods of RT-PCR. Stanley Neuropathology Consortium.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effects of specimen collection, processing, and storage conditions on stability of human immunodeficiency virus type 1 RNA levels in plasma

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Loss of heterozygosity in normal tissue adjacent to breast carcinomas.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Isolation of biologically active RNA from human autopsy for the study of cystic fibrosis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

PCR amplification from paraffin-embedded tissues: recommendations on fixatives for long-term storage and prospective studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of pre- and postmortem variables on specific mRNA levels in human brain.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Tissue is alive: New technologies are needed to address the problems of protein biomarker pre-analytical variability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Approaching clinical proteomics: current state and future fields of application in cellular proteomics

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Progressive degradation of serum samples limits proteomic biomarker discovery.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Ovarian cancer early detection claims are biased.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Limits of preservation of samples for urine strip tests and particle counting.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Quality control for microarray analysis of human brain samples: The impact of postmortem factors, RNA characteristics, and histopathology

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Laboratory handling and histology reporting of breast specimens from patients who have received neoadjuvant chemotherapy

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Human postmortem brain tissue and 2-mm tissue microarrays.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Preanalytical aspects of quantitative TaqMan real-time RT-PCR: applications for TF and VEGF mRNA quantification.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Long-term storage and recovery of buccal cell DNA from treated cards.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Reporting recommendations for tumor marker prognostic studies (REMARK).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Analytical and preanalytical biases in serum proteomic pattern analysis for breast cancer diagnosis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Comparison of ante- and post-mortem PSA levels for epidemiological studies.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effects of preanalytical factors on the molecular size of cell-free DNA in blood

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Bias as a threat to the validity of cancer molecular-marker research

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Potential interferences from blood collection tubes in mass spectrometric analyses of serum polypeptides

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Plastic versus glass tubes: effects on analytical performance of selected serum and plasma hormone assays.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Immunohistochemical detection of EGFR in paraffin-embedded tumor tissues: variation in staining intensity due to choice of fixative and storage time of tissue sections

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of buffered formalin on amplification of DNA from paraffin wax embedded small biopsies using real-time PCR.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

An optimistic view for quantifying mRNA in post-mortem human brain

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Effect of duration of fixation on quantitative reverse transcription polymerase chain reaction analyses

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Repeated freezing and thawing does not generally alter assay results for several commonly studied reproductive hormones

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3169291

Impact of pre-analytical handling on bone marrow mRNA gene expression

26 September 2018

1 reference

12 December 2020

What Is the Best Sample for Determining the Early Postmortem Period by On-the-Spot Flow Cytometry Analysis?

1 reference

12 December 2020

Microsatellite stability in human post-mortem tissues

1 reference

12 December 2020

Classification of human tumors using gene expression profiles obtained after microarray analysis of fine-needle aspiration biopsy samples

1 reference

12 December 2020

Considerations in the application of selected molecular biology techniques in the clinical laboratory: preanalytical and analytical issues

1 reference

12 December 2020

Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: a comparison to snap-frozen material using oligonucleotide microarrays

1 reference

12 December 2020

Comparison of blood counts in venous, fingertip and arterial blood and their measurement variation

1 reference

12 December 2020

DNA extraction and stability for epidemiological studies

1 reference

12 December 2020

Quality improvement by standardization of procurement and processing of thyroid fine-needle aspirates in the absence of on-site cytological evaluation

1 reference

12 December 2020

Effect of blood collection tube types on the measurement of human epidermal growth factor

1 reference

12 December 2020

Effect of ischaemia on the activities of human hepatic acyl-CoA:cholesterol acyltransferase and other microsomal enzymes

1 reference

12 December 2020

Effects of Solution Conditions, Processing Parameters, and Container Materials on Aggregation of a Monoclonal Antibody during Freeze-Thawing

1 reference

12 December 2020

Preanalytical factors and their influence on analytical quality specifications

1 reference

12 December 2020

Preanalytical mRNA stabilization of whole bone marrow samples

1 reference

12 December 2020

Fine-needle aspiration biopsy of non-Hodgkin lymphoma for use in expression microarray analysis

1 reference

12 December 2020

Effect of serum volume and time of exposure to gel barrier tubes on results for progesterone by Roche Diagnostics Elecsys 2010

1 reference

12 December 2020

Identifiers

DOI

10.1021/PR200021N

1 reference

7 August 2017

1 reference

7 August 2017

1 reference